Additional file 20: of Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Additional file 3: of Dual RNA-seq analysis provides new insights into interactions between Norway spruce and necrotrophic pathogen Heterobasidion annosum s.l.

Andriy Kovalchuk (669619)
Zhen Zeng (238754)
Rajendra Ghimire (6173666)
Minna KivimĂ¤enpĂ¤Ă¤ (6173669)
Tommaso Raffaello (333962)
Mengxia Liu (1454956)
Mukrimin Mukrimin (5370008)
Risto Kasanen (537679)
Hui Sun (107933)
Riitta Julkunen-Tiitto (334380)
Jarmo Holopainen (6173672)
Fred Asiegbu (3539462)

January 2019

Table S3. List of Norway spruce genes showing higher transcript abundance in asymptomatic trees. (XL...

Data from: Genome-wide exon-capture approach identifies genetic variants of Norway spruce genes associated with susceptibility to Heterobasidion parviporum infection

Mukrimin, Mukrimin
Kovalchuk, Andriy
Neves, Leandro G.
Jaber, Emad H. A.
Haapanen, Matti
Kirst, Matias
Asiegbu, Fred O.

June 2018

Root and butt rot caused by members of the Heterobasidion annosum species complex is the most econom...

Data_Sheet_5_Genome-Wide Exon-Capture Approach Identifies Genetic Variants of Norway Spruce Genes Associated With Susceptibility to Heterobasidion parviporum Infection.DOCX

Mukrimin Mukrimin (5370008)
Andriy Kovalchuk (669619)
Leandro G. Neves (797057)
Emad H. A. Jaber (5370005)
Matti Haapanen (5370011)
Matias Kirst (91546)
Fred O. Asiegbu (333965)

June 2018

<p>Root and butt rot caused by members of the Heterobasidion annosum species complex is the most eco...

Additional file 22: of Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Zhen Zeng (238754)
Hui Sun (107933)
Eeva Vainio (5009051)
Tommaso Raffaello (333962)
Andriy Kovalchuk (669619)
Emmanuelle Morin (11604)
SĂŠbastien Duplessis (5009048)
Fred Asiegbu (3539462)

March 2018

Notes. Divergent, conserved and duplicated secreted protein coding genes. (DOCX 24Â kb

Additional file 16: of Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Zhen Zeng (238754)
Hui Sun (107933)
Eeva Vainio (5009051)
Tommaso Raffaello (333962)
Andriy Kovalchuk (669619)
Emmanuelle Morin (11604)
SĂŠbastien Duplessis (5009048)
Fred Asiegbu (3539462)

March 2018

Table S8. Nucleotides counts and their frequencies within 1Â bp flanking C-to-T mutations. (DOCX 13Â...

Additional file 11: of Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Zhen Zeng (238754)
Hui Sun (107933)
Eeva Vainio (5009051)
Tommaso Raffaello (333962)
Andriy Kovalchuk (669619)
Emmanuelle Morin (11604)
SĂŠbastien Duplessis (5009048)
Fred Asiegbu (3539462)

March 2018

Table S5. Summary of peptidases, peptidase inhibitors and peroxidases in S15 secretome. (DOCX 14Â kb

Additional file 18: of Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Zhen Zeng (238754)
Hui Sun (107933)
Eeva Vainio (5009051)
Tommaso Raffaello (333962)
Andriy Kovalchuk (669619)
Emmanuelle Morin (11604)
SĂŠbastien Duplessis (5009048)
Fred Asiegbu (3539462)

March 2018

Table S10. Annotation of secretome in S15 (including all database searches and gene classification r...

Additional file 1: of Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Zhen Zeng (238754)
Hui Sun (107933)
Eeva Vainio (5009051)
Tommaso Raffaello (333962)
Andriy Kovalchuk (669619)
Emmanuelle Morin (11604)
SĂŠbastien Duplessis (5009048)
Fred Asiegbu (3539462)

March 2018

Methods. Virulence validation of two selected isolates in greenhouse. (DOCX 12Â kb

Additional file 3: of Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Zhen Zeng (238754)
Hui Sun (107933)
Eeva Vainio (5009051)
Tommaso Raffaello (333962)
Andriy Kovalchuk (669619)
Emmanuelle Morin (11604)
SĂŠbastien Duplessis (5009048)
Fred Asiegbu (3539462)

March 2018

Figure S1. Norway spruce seedlings infected by isolate S15 (upper row) and S12 (lower row) at 15 dpi...

Additional file 17: of Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Zhen Zeng (238754)
Hui Sun (107933)
Eeva Vainio (5009051)
Tommaso Raffaello (333962)
Andriy Kovalchuk (669619)
Emmanuelle Morin (11604)
Sébastien Duplessis (141607)
Fred Asiegbu (3539462)

March 2018

Table S9. Annotation of genes in different categories. (a) core genes (b) deleted genes (c) duplicat...

Additional file 8: of Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Zhen Zeng (238754)
Hui Sun (107933)
Eeva Vainio (5009051)
Tommaso Raffaello (333962)
Andriy Kovalchuk (669619)
Emmanuelle Morin (11604)
SĂŠbastien Duplessis (5009048)
Fred Asiegbu (3539462)

March 2018

Figure S3 Simple sequence repeats (SSRs) distribution in selected genomic regions of S15. Numbers on...

Additional file 4: of Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Zhen Zeng (238754)
Hui Sun (107933)
Eeva Vainio (5009051)
Tommaso Raffaello (333962)
Andriy Kovalchuk (669619)
Emmanuelle Morin (11604)
Sébastien Duplessis (141607)
Fred Asiegbu (3539462)

March 2018

Figure S2. (a) Sporulation and (b) Vegetative growth rate of 15 H. parviporum isolates. Isolates wer...

Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Zeng, Zhen
Sun, Hui
Vainio, Eeva J.
Raffaello, Tommaso
Kovalchuk, Andriy
Morin, Emmanuelle
Duplessis, Sébastien

January 2018

Background: Heterobasidion parviporum is an economically most important fungal forest pathogen in no...

Additional file 1: of Dual RNA-seq analysis provides new insights into interactions between Norway spruce and necrotrophic pathogen Heterobasidion annosum s.l.

Andriy Kovalchuk (669619)
Zhen Zeng (238754)
Rajendra Ghimire (6173666)
Minna KivimĂ¤enpĂ¤Ă¤ (6173669)
Tommaso Raffaello (333962)
Mengxia Liu (1454956)
Mukrimin Mukrimin (5370008)
Risto Kasanen (537679)
Hui Sun (107933)
Riitta Julkunen-Tiitto (334380)
Jarmo Holopainen (6173672)
Fred Asiegbu (3539462)

January 2019

Table S1. List of Heterobasidion genes expressed during colonization of Norway spruce trees. (XLSX 7...

Additional file 2: of Dual RNA-seq analysis provides new insights into interactions between Norway spruce and necrotrophic pathogen Heterobasidion annosum s.l.

Andriy Kovalchuk (669619)
Zhen Zeng (238754)
Rajendra Ghimire (6173666)
Minna KivimĂ¤enpĂ¤Ă¤ (6173669)
Tommaso Raffaello (333962)
Mengxia Liu (1454956)
Mukrimin Mukrimin (5370008)
Risto Kasanen (537679)
Hui Sun (107933)
Riitta Julkunen-Tiitto (334380)
Jarmo Holopainen (6173672)
Fred Asiegbu (3539462)

January 2019

Table S2. List of Norway spruce genes showing higher transcript abundance in symptomatic trees. (XLS...

Additional file 3: of Dual RNA-seq analysis provides new insights into interactions between Norway spruce and necrotrophic pathogen Heterobasidion annosum s.l.

Andriy Kovalchuk (669619)
Zhen Zeng (238754)
Rajendra Ghimire (6173666)
Minna KivimĂ¤enpĂ¤Ă¤ (6173669)
Tommaso Raffaello (333962)
Mengxia Liu (1454956)
Mukrimin Mukrimin (5370008)
Risto Kasanen (537679)
Hui Sun (107933)
Riitta Julkunen-Tiitto (334380)
Jarmo Holopainen (6173672)
Fred Asiegbu (3539462)

January 2019

Table S3. List of Norway spruce genes showing higher transcript abundance in asymptomatic trees. (XL...

Data from: Genome-wide exon-capture approach identifies genetic variants of Norway spruce genes associated with susceptibility to Heterobasidion parviporum infection

Mukrimin, Mukrimin
Kovalchuk, Andriy
Neves, Leandro G.
Jaber, Emad H. A.
Haapanen, Matti
Kirst, Matias
Asiegbu, Fred O.

June 2018

Root and butt rot caused by members of the Heterobasidion annosum species complex is the most econom...

Data_Sheet_5_Genome-Wide Exon-Capture Approach Identifies Genetic Variants of Norway Spruce Genes Associated With Susceptibility to Heterobasidion parviporum Infection.DOCX

Mukrimin Mukrimin (5370008)
Andriy Kovalchuk (669619)
Leandro G. Neves (797057)
Emad H. A. Jaber (5370005)
Matti Haapanen (5370011)
Matias Kirst (91546)
Fred O. Asiegbu (333965)

June 2018

<p>Root and butt rot caused by members of the Heterobasidion annosum species complex is the most eco...

Additional file 22: of Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Zhen Zeng (238754)
Hui Sun (107933)
Eeva Vainio (5009051)
Tommaso Raffaello (333962)
Andriy Kovalchuk (669619)
Emmanuelle Morin (11604)
SĂŠbastien Duplessis (5009048)
Fred Asiegbu (3539462)

March 2018

Notes. Divergent, conserved and duplicated secreted protein coding genes. (DOCX 24Â kb

Additional file 16: of Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Zhen Zeng (238754)
Hui Sun (107933)
Eeva Vainio (5009051)
Tommaso Raffaello (333962)
Andriy Kovalchuk (669619)
Emmanuelle Morin (11604)
SĂŠbastien Duplessis (5009048)
Fred Asiegbu (3539462)

March 2018

Table S8. Nucleotides counts and their frequencies within 1Â bp flanking C-to-T mutations. (DOCX 13Â...

Additional file 11: of Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Zhen Zeng (238754)
Hui Sun (107933)
Eeva Vainio (5009051)
Tommaso Raffaello (333962)
Andriy Kovalchuk (669619)
Emmanuelle Morin (11604)
SĂŠbastien Duplessis (5009048)
Fred Asiegbu (3539462)

March 2018

Table S5. Summary of peptidases, peptidase inhibitors and peroxidases in S15 secretome. (DOCX 14Â kb

Additional file 18: of Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Zhen Zeng (238754)
Hui Sun (107933)
Eeva Vainio (5009051)
Tommaso Raffaello (333962)
Andriy Kovalchuk (669619)
Emmanuelle Morin (11604)
SĂŠbastien Duplessis (5009048)
Fred Asiegbu (3539462)

March 2018

Table S10. Annotation of secretome in S15 (including all database searches and gene classification r...

Additional file 1: of Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Zhen Zeng (238754)
Hui Sun (107933)
Eeva Vainio (5009051)
Tommaso Raffaello (333962)
Andriy Kovalchuk (669619)
Emmanuelle Morin (11604)
SĂŠbastien Duplessis (5009048)
Fred Asiegbu (3539462)

March 2018

Methods. Virulence validation of two selected isolates in greenhouse. (DOCX 12Â kb

Additional file 3: of Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Zhen Zeng (238754)
Hui Sun (107933)
Eeva Vainio (5009051)
Tommaso Raffaello (333962)
Andriy Kovalchuk (669619)
Emmanuelle Morin (11604)
SĂŠbastien Duplessis (5009048)
Fred Asiegbu (3539462)

March 2018

Figure S1. Norway spruce seedlings infected by isolate S15 (upper row) and S12 (lower row) at 15 dpi...

Additional file 17: of Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Zhen Zeng (238754)
Hui Sun (107933)
Eeva Vainio (5009051)
Tommaso Raffaello (333962)
Andriy Kovalchuk (669619)
Emmanuelle Morin (11604)
Sébastien Duplessis (141607)
Fred Asiegbu (3539462)

March 2018

Table S9. Annotation of genes in different categories. (a) core genes (b) deleted genes (c) duplicat...

Additional file 8: of Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Zhen Zeng (238754)
Hui Sun (107933)
Eeva Vainio (5009051)
Tommaso Raffaello (333962)
Andriy Kovalchuk (669619)
Emmanuelle Morin (11604)
SĂŠbastien Duplessis (5009048)
Fred Asiegbu (3539462)

March 2018

Figure S3 Simple sequence repeats (SSRs) distribution in selected genomic regions of S15. Numbers on...

Additional file 4: of Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Zhen Zeng (238754)
Hui Sun (107933)
Eeva Vainio (5009051)
Tommaso Raffaello (333962)
Andriy Kovalchuk (669619)
Emmanuelle Morin (11604)
Sébastien Duplessis (141607)
Fred Asiegbu (3539462)

March 2018

Figure S2. (a) Sporulation and (b) Vegetative growth rate of 15 H. parviporum isolates. Isolates wer...

Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Zeng, Zhen
Sun, Hui
Vainio, Eeva J.
Raffaello, Tommaso
Kovalchuk, Andriy
Morin, Emmanuelle
Duplessis, Sébastien

January 2018

Background: Heterobasidion parviporum is an economically most important fungal forest pathogen in no...

Additional file 1: of Dual RNA-seq analysis provides new insights into interactions between Norway spruce and necrotrophic pathogen Heterobasidion annosum s.l.

Andriy Kovalchuk (669619)
Zhen Zeng (238754)
Rajendra Ghimire (6173666)
Minna KivimĂ¤enpĂ¤Ă¤ (6173669)
Tommaso Raffaello (333962)
Mengxia Liu (1454956)
Mukrimin Mukrimin (5370008)
Risto Kasanen (537679)
Hui Sun (107933)
Riitta Julkunen-Tiitto (334380)
Jarmo Holopainen (6173672)
Fred Asiegbu (3539462)

January 2019

Table S1. List of Heterobasidion genes expressed during colonization of Norway spruce trees. (XLSX 7...

Additional file 2: of Dual RNA-seq analysis provides new insights into interactions between Norway spruce and necrotrophic pathogen Heterobasidion annosum s.l.

Andriy Kovalchuk (669619)
Zhen Zeng (238754)
Rajendra Ghimire (6173666)
Minna KivimĂ¤enpĂ¤Ă¤ (6173669)
Tommaso Raffaello (333962)
Mengxia Liu (1454956)
Mukrimin Mukrimin (5370008)
Risto Kasanen (537679)
Hui Sun (107933)
Riitta Julkunen-Tiitto (334380)
Jarmo Holopainen (6173672)
Fred Asiegbu (3539462)

January 2019

Table S2. List of Norway spruce genes showing higher transcript abundance in symptomatic trees. (XLS...

Additional file 3: of Dual RNA-seq analysis provides new insights into interactions between Norway spruce and necrotrophic pathogen Heterobasidion annosum s.l.

Andriy Kovalchuk (669619)
Zhen Zeng (238754)
Rajendra Ghimire (6173666)
Minna KivimĂ¤enpĂ¤Ă¤ (6173669)
Tommaso Raffaello (333962)
Mengxia Liu (1454956)
Mukrimin Mukrimin (5370008)
Risto Kasanen (537679)
Hui Sun (107933)
Riitta Julkunen-Tiitto (334380)
Jarmo Holopainen (6173672)
Fred Asiegbu (3539462)

January 2019

Table S3. List of Norway spruce genes showing higher transcript abundance in asymptomatic trees. (XL...

Data from: Genome-wide exon-capture approach identifies genetic variants of Norway spruce genes associated with susceptibility to Heterobasidion parviporum infection

Mukrimin, Mukrimin
Kovalchuk, Andriy
Neves, Leandro G.
Jaber, Emad H. A.
Haapanen, Matti
Kirst, Matias
Asiegbu, Fred O.

June 2018

Root and butt rot caused by members of the Heterobasidion annosum species complex is the most econom...

Data_Sheet_5_Genome-Wide Exon-Capture Approach Identifies Genetic Variants of Norway Spruce Genes Associated With Susceptibility to Heterobasidion parviporum Infection.DOCX

Mukrimin Mukrimin (5370008)
Andriy Kovalchuk (669619)
Leandro G. Neves (797057)
Emad H. A. Jaber (5370005)
Matti Haapanen (5370011)
Matias Kirst (91546)
Fred O. Asiegbu (333965)

June 2018

<p>Root and butt rot caused by members of the Heterobasidion annosum species complex is the most eco...

Additional file 20: of Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Abstract

Extracted data

Additional file 20: of Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

Abstract

Extracted data

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