Genetic regulatory circuits universally cope with different sources of noise that limit their ability to coordinate input and output signals. In many cases, optimal regulatory performance can be thought to correspond to configurations of variables and parameters that maximize the mutual information between inputs and outputs. Since the mid-2000s, such optima have been well characterized in several biologically relevant cases. Here we use methods of statistical field theory to calculate the statistics of the maximal mutual information (the "capacity") achievable by tuning the input variable only in an ensemble of regulatory motifs, such that a single controller regulates N targets. Assuming (i) sufficiently large N, (ii) quenched random kine...
A stochastic genetic toggle switch model that consists of two identical, mutually repressive genes i...
Genetic regulatory networks enable cells to respond to changes in internal and external conditions b...
One of the most important roles of cells is performing their cellular tasks properly for survival. C...
We quantify the influence of the topology of a transcriptional regulatory network on its ability to ...
Gene networks can often be interpreted as computational circuits. This article investigates the comp...
We quantify the influence of the topology of a transcriptional regulatory network on its ability to ...
<div><p>Random fluctuations in the amount of cellular components like mRNA and protein molecules are...
Random fluctuations in the amount of cellular components like mRNA and protein molecules are inevita...
<p>Intrinsic noise, genetic redundancy, and heterogeneity increase the transmission of information b...
<div><p>One of the most important roles of cells is performing their cellular tasks properly for sur...
We typically think of cells as responding to external signals independently by regulating their gene...
[[abstract]]Background Noise has many important roles in cellular genetic regulatory functions at th...
Living cells must control the reading out or "expression" of information encoded in their ...
The inference of gene regulatory networks from gene expression data is a difficult problem because t...
Many biological regulatory systems respond with a physiological delay when processing signals. A sim...
A stochastic genetic toggle switch model that consists of two identical, mutually repressive genes i...
Genetic regulatory networks enable cells to respond to changes in internal and external conditions b...
One of the most important roles of cells is performing their cellular tasks properly for survival. C...
We quantify the influence of the topology of a transcriptional regulatory network on its ability to ...
Gene networks can often be interpreted as computational circuits. This article investigates the comp...
We quantify the influence of the topology of a transcriptional regulatory network on its ability to ...
<div><p>Random fluctuations in the amount of cellular components like mRNA and protein molecules are...
Random fluctuations in the amount of cellular components like mRNA and protein molecules are inevita...
<p>Intrinsic noise, genetic redundancy, and heterogeneity increase the transmission of information b...
<div><p>One of the most important roles of cells is performing their cellular tasks properly for sur...
We typically think of cells as responding to external signals independently by regulating their gene...
[[abstract]]Background Noise has many important roles in cellular genetic regulatory functions at th...
Living cells must control the reading out or "expression" of information encoded in their ...
The inference of gene regulatory networks from gene expression data is a difficult problem because t...
Many biological regulatory systems respond with a physiological delay when processing signals. A sim...
A stochastic genetic toggle switch model that consists of two identical, mutually repressive genes i...
Genetic regulatory networks enable cells to respond to changes in internal and external conditions b...
One of the most important roles of cells is performing their cellular tasks properly for survival. C...