Small Circular Rep-Encoding Single-Stranded DNA Genomes in Peruvian Diarrhea Virome

Unveiling Crucivirus Diversity by Mining Metagenomic Data

Ignacio de la Higuera
George W. Kasun
Ellis L. Torrance
Alyssa A. Pratt
Amberlee Maluenda
Jonathan Colombet
Maxime Bisseux
Viviane Ravet
Anisha Dayaram
Daisy Stainton
Simona Kraberger
Peyman Zawar-Reza
Sharyn Goldstien
James V. Briskie
Robyn White
Helen Taylor
Christopher Gomez
David G. Ainley
Jon S. Harding
Rafaela S. Fontenele
Joshua Schreck
Simone G. Ribeiro
Stephen A. Oswald
Jennifer M. Arnold
François Enault
Arvind Varsani
Kenneth M. Stedman

October 2020

ABSTRACT The discovery of cruciviruses revealed the most explicit example of a common protein homolo...

Novel single?stranded, circular DNA virus identified in cats in Japan

Takano, Tomomi...[et al.]

January 2018

AbstractWe detected a novel feline stool-associated circular DNA virus (FeSCV) in fecal samples from...

A Field Guide to Eukaryotic Circular Single-stranded DNA Viruses: Insights Gained from Metagenomics

Rosario, Karyna
Duffy, Siobain
Breitbart, Mya

October 2012

Despite their small size and limited protein-coding capacity, the rapid evolution rates of single-st...

Small Circular Rep-Encoding Single-Stranded DNA Genomes in Peruvian Diarrhea Virome

Altan, Eda
Del Valle Mendoza, Juana Mercedes
Deng, Xutao
Phan, Tung G.
Sadeghi, Mohammadreza
Delwart, Eric L.

September 2017

Metagenomic analysis of diarrhea samples revealed the presence of numerous human enteric viruses and...

The fecal virome of South and Central American children with diarrhea includes small circular DNA viral genomes of unknown origin

Phan, Tung Gia
da Costa, Antonio Charlys
Del Valle Mendoza, Juana
Bucardo Rivera, Filemon
Nordgren, Johan
O'Ryan, Miguel
Deng, Xutao
Delwart, Eric

April 2016

Viral metagenomics of feces collected from 58 Peruvian children with unexplained diarrhea revealed s...

The fecal virome of South and Central American children with diarrhea includes small circular DNA viral genomes of unknown origin.

Phan, Tung Gia
da Costa, Antonio Charlys
Del Valle Mendoza, Juana
Bucardo Rivera, Filemon
Nordgren, Johan
O'Ryan, Miguel
Deng, Xutao
Delwart, Eric

April 2016

Viral metagenomics of feces collected from 58 Peruvian children with unexplained diarrhea revealed s...

Circular replication-associated protein encoding DNA viruses identified in the faecal matter of various animals in New Zealand

Steel, Olivia
Kraberger, Simona
Sikorski, Alyssa
Young, Laura M.
Catchpole, Ryan J.
Stevens, Aaron J.
Ladley, Jenny J.
Coray, Dorien S.
Stainton, Daisy
Dayarama, Anisha
Julian, Laurel
van Bysterveldt, Katherine
Varsani, Arvind

September 2016

In recent years, innovations in molecular techniques and sequencing technologies have resulted in a ...

Small circular single stranded DNA viral genomes in unexplained cases of human encephalitis, diarrhea, and in untreated sewage

Phan, Tung Gia
Mori, Daisuke
Deng, Xutao
Rajindrajith, Shaman
Ranawaka, Udaya
Fan Ng, Terry Fei
Bucardo-Rivera, Filemon
Orlandi, Patricia
Ahmed, Kamruddin
Delwart, Eric

August 2015

AbstractViruses with small circular ssDNA genomes encoding a replication initiator protein can infec...

Correspondence

Arvind Varsani

January 2016

Viruses with circular ssDNA genomes that encode a replication initiator protein (Rep) are among the ...

Exploring the diversity of CRESS DNA viruses associated with the faecal matter of wild and domestic animals in New Zealand.

Steel, Olivia

January 2016

Before the advent of cost-effective, efficient next-generation sequencing technologies, viral resear...

Discovery of novel circular replication-associated protein encoding single-stranded DNA viruses in ecosystems using viral metagenomic approaches

Dayaram, Anisha

January 2015

The introduction of next-generation sequencing (NGS) technologies has dramatically changed the field...

Smacoviridae: a new family of animal?associated single?stranded DNAviruses

Varsani, Arvind
Krupovic, Mart

January 2018

AbstractSmacoviruses have small (?2.3-2.9 kb), circular single-stranded DNA genomes encoding rolling...

Identification of a Novel Single-Stranded Circular DNA Virus in Pig

August 2016

Porcine stool-associated circular virus 5 (PoSCV5) was detected in the feces of a pig with diarrhea....

New Viruses in Idiopathic Human Diarrhea Cases, the Netherlands

Saskia L. Smits
Claudia M.E. Schapendonk
Janko van Beek
Harry Vennema
Anita C. Schürch
Debby Schipper
Rogier Bodewes
Bart L. Haagmans
Albert D. M. E. Osterhaus
Marion P. Koopmans

July 2014

Emerging viral infections can be identified by using a viral metagenomics approach for clinical huma...

Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome.

Nayfach, Stephen
Páez-Espino, David
Call, Lee
Low, Soo Jen
Sberro, Hila
Ivanova, Natalia N
Proal, Amy D
Fischbach, Michael A
Bhatt, Ami S
Hugenholtz, Philip
Kyrpides, Nikos C

July 2021

Bacteriophages have important roles in the ecology of the human gut microbiome but are under-represe...

Unveiling Crucivirus Diversity by Mining Metagenomic Data

Ignacio de la Higuera
George W. Kasun
Ellis L. Torrance
Alyssa A. Pratt
Amberlee Maluenda
Jonathan Colombet
Maxime Bisseux
Viviane Ravet
Anisha Dayaram
Daisy Stainton
Simona Kraberger
Peyman Zawar-Reza
Sharyn Goldstien
James V. Briskie
Robyn White
Helen Taylor
Christopher Gomez
David G. Ainley
Jon S. Harding
Rafaela S. Fontenele
Joshua Schreck
Simone G. Ribeiro
Stephen A. Oswald
Jennifer M. Arnold
François Enault
Arvind Varsani
Kenneth M. Stedman

October 2020

ABSTRACT The discovery of cruciviruses revealed the most explicit example of a common protein homolo...

Novel single?stranded, circular DNA virus identified in cats in Japan

Takano, Tomomi...[et al.]

January 2018

AbstractWe detected a novel feline stool-associated circular DNA virus (FeSCV) in fecal samples from...

A Field Guide to Eukaryotic Circular Single-stranded DNA Viruses: Insights Gained from Metagenomics

Rosario, Karyna
Duffy, Siobain
Breitbart, Mya

October 2012

Despite their small size and limited protein-coding capacity, the rapid evolution rates of single-st...

Small Circular Rep-Encoding Single-Stranded DNA Genomes in Peruvian Diarrhea Virome

Altan, Eda
Del Valle Mendoza, Juana Mercedes
Deng, Xutao
Phan, Tung G.
Sadeghi, Mohammadreza
Delwart, Eric L.

September 2017

Metagenomic analysis of diarrhea samples revealed the presence of numerous human enteric viruses and...

The fecal virome of South and Central American children with diarrhea includes small circular DNA viral genomes of unknown origin

Phan, Tung Gia
da Costa, Antonio Charlys
Del Valle Mendoza, Juana
Bucardo Rivera, Filemon
Nordgren, Johan
O'Ryan, Miguel
Deng, Xutao
Delwart, Eric

April 2016

Viral metagenomics of feces collected from 58 Peruvian children with unexplained diarrhea revealed s...

The fecal virome of South and Central American children with diarrhea includes small circular DNA viral genomes of unknown origin.

Phan, Tung Gia
da Costa, Antonio Charlys
Del Valle Mendoza, Juana
Bucardo Rivera, Filemon
Nordgren, Johan
O'Ryan, Miguel
Deng, Xutao
Delwart, Eric

April 2016

Viral metagenomics of feces collected from 58 Peruvian children with unexplained diarrhea revealed s...

Circular replication-associated protein encoding DNA viruses identified in the faecal matter of various animals in New Zealand

Steel, Olivia
Kraberger, Simona
Sikorski, Alyssa
Young, Laura M.
Catchpole, Ryan J.
Stevens, Aaron J.
Ladley, Jenny J.
Coray, Dorien S.
Stainton, Daisy
Dayarama, Anisha
Julian, Laurel
van Bysterveldt, Katherine
Varsani, Arvind

September 2016

In recent years, innovations in molecular techniques and sequencing technologies have resulted in a ...

Small circular single stranded DNA viral genomes in unexplained cases of human encephalitis, diarrhea, and in untreated sewage

Phan, Tung Gia
Mori, Daisuke
Deng, Xutao
Rajindrajith, Shaman
Ranawaka, Udaya
Fan Ng, Terry Fei
Bucardo-Rivera, Filemon
Orlandi, Patricia
Ahmed, Kamruddin
Delwart, Eric

August 2015

AbstractViruses with small circular ssDNA genomes encoding a replication initiator protein can infec...

Correspondence

Arvind Varsani

January 2016

Viruses with circular ssDNA genomes that encode a replication initiator protein (Rep) are among the ...

Exploring the diversity of CRESS DNA viruses associated with the faecal matter of wild and domestic animals in New Zealand.

Steel, Olivia

January 2016

Before the advent of cost-effective, efficient next-generation sequencing technologies, viral resear...

Discovery of novel circular replication-associated protein encoding single-stranded DNA viruses in ecosystems using viral metagenomic approaches

Dayaram, Anisha

January 2015

The introduction of next-generation sequencing (NGS) technologies has dramatically changed the field...

Smacoviridae: a new family of animal?associated single?stranded DNAviruses

Varsani, Arvind
Krupovic, Mart

January 2018

AbstractSmacoviruses have small (?2.3-2.9 kb), circular single-stranded DNA genomes encoding rolling...

Identification of a Novel Single-Stranded Circular DNA Virus in Pig

August 2016

Porcine stool-associated circular virus 5 (PoSCV5) was detected in the feces of a pig with diarrhea....

New Viruses in Idiopathic Human Diarrhea Cases, the Netherlands

Saskia L. Smits
Claudia M.E. Schapendonk
Janko van Beek
Harry Vennema
Anita C. Schürch
Debby Schipper
Rogier Bodewes
Bart L. Haagmans
Albert D. M. E. Osterhaus
Marion P. Koopmans

July 2014

Emerging viral infections can be identified by using a viral metagenomics approach for clinical huma...

Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome.

Nayfach, Stephen
Páez-Espino, David
Call, Lee
Low, Soo Jen
Sberro, Hila
Ivanova, Natalia N
Proal, Amy D
Fischbach, Michael A
Bhatt, Ami S
Hugenholtz, Philip
Kyrpides, Nikos C

July 2021

Bacteriophages have important roles in the ecology of the human gut microbiome but are under-represe...

Unveiling Crucivirus Diversity by Mining Metagenomic Data

Ignacio de la Higuera
George W. Kasun
Ellis L. Torrance
Alyssa A. Pratt
Amberlee Maluenda
Jonathan Colombet
Maxime Bisseux
Viviane Ravet
Anisha Dayaram
Daisy Stainton
Simona Kraberger
Peyman Zawar-Reza
Sharyn Goldstien
James V. Briskie
Robyn White
Helen Taylor
Christopher Gomez
David G. Ainley
Jon S. Harding
Rafaela S. Fontenele
Joshua Schreck
Simone G. Ribeiro
Stephen A. Oswald
Jennifer M. Arnold
François Enault
Arvind Varsani
Kenneth M. Stedman

October 2020

ABSTRACT The discovery of cruciviruses revealed the most explicit example of a common protein homolo...

Novel single?stranded, circular DNA virus identified in cats in Japan

Takano, Tomomi...[et al.]

January 2018

AbstractWe detected a novel feline stool-associated circular DNA virus (FeSCV) in fecal samples from...

A Field Guide to Eukaryotic Circular Single-stranded DNA Viruses: Insights Gained from Metagenomics

Rosario, Karyna
Duffy, Siobain
Breitbart, Mya

October 2012

Despite their small size and limited protein-coding capacity, the rapid evolution rates of single-st...

Small Circular Rep-Encoding Single-Stranded DNA Genomes in Peruvian Diarrhea Virome

Abstract

Extracted data

Small Circular Rep-Encoding Single-Stranded DNA Genomes in Peruvian Diarrhea Virome

Abstract

Extracted data

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