Automatic extraction of reliable regions from multiple sequence alignments-0

<p><b>Copyright information:</b></p><p>Taken from "Automatic extraction of reliable regions from multiple sequence alignments"</p><p>http://www.biomedcentral.com/1471-2105/8/S5/S9</p><p>BMC Bioinformatics 2007;8(Suppl 5):S9-S9.</p><p>Published online 24 May 2007</p><p>PMCID:PMC1892097.</p><p></p>d Dialign alignment of the Balibase 3.0 test case BB20007. The parameter was chosen to be two, requiring that residues in the output alignment appear in at least two input alignments. Each residue is colored according to the average occurrence of the POARs it is involved in. Regions that appear in red are identically aligned in all 5 input alignments while green and blue regions are only aligned identically in fewer and fewer cases. It is clear that all alignment programs find conserved motifs in the sequences but disagree on how the residues in between should be aligned