G true trees. Leftmost column: full alignments with no gap pattern applied. Green: gap pattern applied, phylogeny inferred directly (without the use of masking or SIA). Red: alignment masking. Blue: SIA. . Proportion of sequences retained per family. Boxplots show the median (horizontal black bar) and interquartile range (colored boxes).<p><b>Copyright information:</b></p><p>Taken from "Using ESTs for phylogenomics: Can one accurately infer a phylogenetic tree from a gappy alignment?"</p><p>http://www.biomedcentral.com/1471-2148/8/95</p><p>BMC Evolutionary Biology 2008;8():95-95.</p><p>Published online 26 Mar 2008</p><p>PMCID:PMC2359737.</p><p></p
<p>The maximum likelihood tree was inferred using the GTRGAMMA substitution model and is based on a ...
Phylogenetic inference is generally performed on the basis of multiple sequence alignments (MSA). Be...
would phylogeneticists ignore computerized sequence alignment? ” Although well aware of the difficul...
G true trees. Leftmost column: full alignments with no gap pattern applied. Green: gap pattern appli...
by black circles around the data points.<p><b>Copyright information:</b></p><p>Taken from "Using EST...
Ny amino acid; "-" represents a gap or missing data.); 2. The overlap-graph and two maximal cliques ...
Background: While full genome sequences are still only available for a handful of taxa, large collec...
Abstract Background While full genome sequences are still only available for a handful of taxa, larg...
Background The alignment of biological sequences is of chief importance to most evolutionary and co...
The classic methodology of inferring a phylogenetic tree from sequence data is composed of two steps...
Background: Most phylogenetic studies using molecular data treat gaps in multiple sequence alignment...
<b>MOTIVATION:</b> Full-length DNA and protein sequences that span the entire length of ...
Abstract Background The effect of alignment gaps on phylogenetic accuracy has been the subject of nu...
Multiple sequence aligners typically work by progressively aligning the most closely related sequenc...
Morrison (2009) raises a very fundamental question, “Why would phylogeneticists ignore computerized ...
<p>The maximum likelihood tree was inferred using the GTRGAMMA substitution model and is based on a ...
Phylogenetic inference is generally performed on the basis of multiple sequence alignments (MSA). Be...
would phylogeneticists ignore computerized sequence alignment? ” Although well aware of the difficul...
G true trees. Leftmost column: full alignments with no gap pattern applied. Green: gap pattern appli...
by black circles around the data points.<p><b>Copyright information:</b></p><p>Taken from "Using EST...
Ny amino acid; "-" represents a gap or missing data.); 2. The overlap-graph and two maximal cliques ...
Background: While full genome sequences are still only available for a handful of taxa, large collec...
Abstract Background While full genome sequences are still only available for a handful of taxa, larg...
Background The alignment of biological sequences is of chief importance to most evolutionary and co...
The classic methodology of inferring a phylogenetic tree from sequence data is composed of two steps...
Background: Most phylogenetic studies using molecular data treat gaps in multiple sequence alignment...
<b>MOTIVATION:</b> Full-length DNA and protein sequences that span the entire length of ...
Abstract Background The effect of alignment gaps on phylogenetic accuracy has been the subject of nu...
Multiple sequence aligners typically work by progressively aligning the most closely related sequenc...
Morrison (2009) raises a very fundamental question, “Why would phylogeneticists ignore computerized ...
<p>The maximum likelihood tree was inferred using the GTRGAMMA substitution model and is based on a ...
Phylogenetic inference is generally performed on the basis of multiple sequence alignments (MSA). Be...
would phylogeneticists ignore computerized sequence alignment? ” Although well aware of the difficul...