Frequency of relative fold-change of probe sets with significant changes in transcript abundance between H and L selection lines, pooled over sexes

Data from: Mixture modeling of transcript abundance classes in natural populations

Hsieh, Wen-Ping
Passador-Gurgel, Gisele
Stone, Eric A.
Gibson, Greg

October 2009

BACKGROUND: Populations diverge in genotype and phenotype under the influence of such evolutionary p...

Expression level fold-change for significant SNP-probe cis- associations shared by pairs of populations.

Barbara E. Stranger (170913)
Stephen B. Montgomery (159816)
Antigone S. Dimas (170915)
Leopold Parts (144647)
Oliver Stegle (170916)
Catherine E. Ingle (170917)
Magda Sekowska (170918)
George Davey Smith (82619)
David Evans (41081)
Maria Gutierrez-Arcelus (170921)
Alkes Price (170926)
Towfique Raj (170931)
James Nisbett (170937)
Alexandra C. Nica (166789)
Claude Beazley (48196)
Richard Durbin (2217)
Panos Deloukas (21564)
Emmanouil T. Dermitzakis (120302)

April 2012

Shown are plots of the absolute value of expression level fold-change between median expression l...

Distribution of fold change and average percent significance rank of 89ADEGS.

Debajyoti Ghosh (841029)
Lili Ding (759980)
Umasundari Sivaprasad (345398)
Esmond Geh (841030)
Jocelyn Biagini Myers (841031)
Jonathan A. Bernstein (841032)
Gurjit K Khurana Hershey (841033)
Tesfaye B. Mersha (841034)

January 2016

Identification and ranking of differentially expressed genes (DEGs) from individual studies using...

Histogram showing the frequency of relative fold-change in probe sets with significant differences in transcript abundance between resistant (R) and sensitive (S) selection lines, pooled over sexes

Tatiana V Morozova (41448)
Robert RH Anholt (41449)
Trudy FC Mackay (8097)

December 2011

Copyright information:Taken from "Phenotypic and transcriptional response to select...

Correlations of the mean H - L difference in expression (x- and y-axes) for significant probe sets in common between two behaviors

Katherine W Jordan (41450)
Mary Anna Carbone (41451)
Akihiko Yamamoto (41452)
Theodore J Morgan (21334)
Trudy FC Mackay (8097)

December 2011

Only probe sets that had significant contrast statements (< 0.05, pooled across sexes) of H ≠ L for ...

The histogram shows the frequencies of genes being among the top 200 genes over 500 resamplings

Martin H van Vliet (53749)
Fabien Reyal (53750)
Hugo M Horlings (53751)
Marc J Van de Vijver (2446)
Marcel JT Reinders (17851)
Lodewyk FA Wessels (23614)

December 2011

Below the histogram, two lanes containing light-blue bars indicate the genes that are part of the pu...

Proteins that showed significant changes in accumulation levels in males following feeding (p<0.05, FDR<0.2).

Caitlin Pitt (280233)
Jeanne A. Robert (280239)
Tiffany R. Bonnett (280231)
Christopher I. Keeling (280235)
Jörg Bohlmann (88925)
Dezene P. W. Huber (478827)

October 2014

Plain text represents proteins whose levels changed following feeding that were unique to the mal...

Relative gene expression profiles in the pair-wise comparison of three reproductive morphs.

Li-Jun Liu (575658)
Hong-Yuan Zheng (575659)
Feng Jiang (95012)
Wei Guo (86150)
Shu-Tang Zhou (575660)

June 2014

(A–C) Distribution of annotated unigenes in gynoparae vs. parthenogenetic females (A), sexual fem...

Patterns of sex-bias over genes.

Mathilde Paris (17385)
Jacqueline E. Villalta (230685)
Michael B. Eisen (13535)
Susan E. Lott (230681)

October 2015

A. Numbers of genes that are female-biased (red) or male-biased (blue) in all four species...

Proteins that showed significant changes in accumulation levels in females following feeding (p<0.05, FDR<0.2).

Caitlin Pitt (280233)
Jeanne A. Robert (280239)
Tiffany R. Bonnett (280231)
Christopher I. Keeling (280235)
Jörg Bohlmann (88925)
Dezene P. W. Huber (478827)

October 2014

Plain text represents proteins whose levels changed following feeding that were unique to the fem...

Gene expression activity depends both on the direction of selection and genetic background.

Benjamin Houot (186944)
Stéphane Fraichard (186945)
Ralph J. Greenspan (186946)
Jean-François Ferveur (54986)

January 2012

The level of transcriptional activity was measured by q-PCR for the Shaker (Sh, top...

Conservation of the links between gene transcription and chromosomal organization in the highly reduced genome of -0

José Vinuelas (22140)
Federica Calevro (22139)
Didier Remond (75889)
Jacques Bernillon (75890)
Yvan Rahbe (22142)
Gérard Febvay (75891)
Jean-Michel Fayard (22141)
Hubert Charles (22138)

December 2011

Copyright information:Taken from "Conservation of the links between gene transcript...

Transcript abundant analysis of chemosensory genes.

Long Ma (133810)
Zhao-Qun Li (427978)
Lei Bian (1894600)
Xiao-Ming Cai (2549698)
Zong-Xiu Luo (2549701)
Yong-Jun Zhang (144160)
Zong-Mao Chen (2549704)

March 2016

In single-end RNA-Seq, the transcript expression abundance was calculated with FPKM value. Differ...

Statistical analysis of the differential expression of genes in the male (red) and female antennae (green) of B. dorsalis.

Zhao Liu (582169)
Guy Smagghe (170171)
Zhongren Lei (321347)
Jin-Jun Wang (57279)

February 2016

If log2 (B_dorsalis_m_FPKM/B_dorsalis_f_FPKM) > 1, then this gene is more expressed in the male a...

Relationship between RNA processing changes and gene expression changes.

Athma A. Pai (119315)
Golshid Baharian (3186786)
Ariane Pagé Sabourin (3186792)
Jessica F. Brinkworth (3186795)
Yohann Nédélec (433064)
Joseph W. Foley (254604)
Jean-Christophe Grenier (3186789)
Katherine J. Siddle (707195)
Anne Dumaine (457931)
Vania Yotova (489390)
Zachary P. Johnson (451758)
Robert E. Lanford (206807)
Christopher B. Burge (61242)
Luis B. Barreiro (235196)

September 2016

(A) Distribution of fold changes in gene expression (y-axis, log2 scale) for ge...

Data from: Mixture modeling of transcript abundance classes in natural populations

Hsieh, Wen-Ping
Passador-Gurgel, Gisele
Stone, Eric A.
Gibson, Greg

October 2009

BACKGROUND: Populations diverge in genotype and phenotype under the influence of such evolutionary p...

Expression level fold-change for significant SNP-probe cis- associations shared by pairs of populations.

Barbara E. Stranger (170913)
Stephen B. Montgomery (159816)
Antigone S. Dimas (170915)
Leopold Parts (144647)
Oliver Stegle (170916)
Catherine E. Ingle (170917)
Magda Sekowska (170918)
George Davey Smith (82619)
David Evans (41081)
Maria Gutierrez-Arcelus (170921)
Alkes Price (170926)
Towfique Raj (170931)
James Nisbett (170937)
Alexandra C. Nica (166789)
Claude Beazley (48196)
Richard Durbin (2217)
Panos Deloukas (21564)
Emmanouil T. Dermitzakis (120302)

April 2012

Shown are plots of the absolute value of expression level fold-change between median expression l...

Distribution of fold change and average percent significance rank of 89ADEGS.

Debajyoti Ghosh (841029)
Lili Ding (759980)
Umasundari Sivaprasad (345398)
Esmond Geh (841030)
Jocelyn Biagini Myers (841031)
Jonathan A. Bernstein (841032)
Gurjit K Khurana Hershey (841033)
Tesfaye B. Mersha (841034)

January 2016

Identification and ranking of differentially expressed genes (DEGs) from individual studies using...

Histogram showing the frequency of relative fold-change in probe sets with significant differences in transcript abundance between resistant (R) and sensitive (S) selection lines, pooled over sexes

Tatiana V Morozova (41448)
Robert RH Anholt (41449)
Trudy FC Mackay (8097)

December 2011

Copyright information:Taken from "Phenotypic and transcriptional response to select...

Correlations of the mean H - L difference in expression (x- and y-axes) for significant probe sets in common between two behaviors

Katherine W Jordan (41450)
Mary Anna Carbone (41451)
Akihiko Yamamoto (41452)
Theodore J Morgan (21334)
Trudy FC Mackay (8097)

December 2011

Only probe sets that had significant contrast statements (< 0.05, pooled across sexes) of H ≠ L for ...

The histogram shows the frequencies of genes being among the top 200 genes over 500 resamplings

Martin H van Vliet (53749)
Fabien Reyal (53750)
Hugo M Horlings (53751)
Marc J Van de Vijver (2446)
Marcel JT Reinders (17851)
Lodewyk FA Wessels (23614)

December 2011

Below the histogram, two lanes containing light-blue bars indicate the genes that are part of the pu...

Proteins that showed significant changes in accumulation levels in males following feeding (p<0.05, FDR<0.2).

Caitlin Pitt (280233)
Jeanne A. Robert (280239)
Tiffany R. Bonnett (280231)
Christopher I. Keeling (280235)
Jörg Bohlmann (88925)
Dezene P. W. Huber (478827)

October 2014

Plain text represents proteins whose levels changed following feeding that were unique to the mal...

Relative gene expression profiles in the pair-wise comparison of three reproductive morphs.

Li-Jun Liu (575658)
Hong-Yuan Zheng (575659)
Feng Jiang (95012)
Wei Guo (86150)
Shu-Tang Zhou (575660)

June 2014

(A–C) Distribution of annotated unigenes in gynoparae vs. parthenogenetic females (A), sexual fem...

Patterns of sex-bias over genes.

Mathilde Paris (17385)
Jacqueline E. Villalta (230685)
Michael B. Eisen (13535)
Susan E. Lott (230681)

October 2015

A. Numbers of genes that are female-biased (red) or male-biased (blue) in all four species...

Proteins that showed significant changes in accumulation levels in females following feeding (p<0.05, FDR<0.2).

Caitlin Pitt (280233)
Jeanne A. Robert (280239)
Tiffany R. Bonnett (280231)
Christopher I. Keeling (280235)
Jörg Bohlmann (88925)
Dezene P. W. Huber (478827)

October 2014

Plain text represents proteins whose levels changed following feeding that were unique to the fem...

Gene expression activity depends both on the direction of selection and genetic background.

Benjamin Houot (186944)
Stéphane Fraichard (186945)
Ralph J. Greenspan (186946)
Jean-François Ferveur (54986)

January 2012

The level of transcriptional activity was measured by q-PCR for the Shaker (Sh, top...

Conservation of the links between gene transcription and chromosomal organization in the highly reduced genome of -0

José Vinuelas (22140)
Federica Calevro (22139)
Didier Remond (75889)
Jacques Bernillon (75890)
Yvan Rahbe (22142)
Gérard Febvay (75891)
Jean-Michel Fayard (22141)
Hubert Charles (22138)

December 2011

Copyright information:Taken from "Conservation of the links between gene transcript...

Transcript abundant analysis of chemosensory genes.

Long Ma (133810)
Zhao-Qun Li (427978)
Lei Bian (1894600)
Xiao-Ming Cai (2549698)
Zong-Xiu Luo (2549701)
Yong-Jun Zhang (144160)
Zong-Mao Chen (2549704)

March 2016

In single-end RNA-Seq, the transcript expression abundance was calculated with FPKM value. Differ...

Statistical analysis of the differential expression of genes in the male (red) and female antennae (green) of B. dorsalis.

Zhao Liu (582169)
Guy Smagghe (170171)
Zhongren Lei (321347)
Jin-Jun Wang (57279)

February 2016

If log2 (B_dorsalis_m_FPKM/B_dorsalis_f_FPKM) > 1, then this gene is more expressed in the male a...

Relationship between RNA processing changes and gene expression changes.

Athma A. Pai (119315)
Golshid Baharian (3186786)
Ariane Pagé Sabourin (3186792)
Jessica F. Brinkworth (3186795)
Yohann Nédélec (433064)
Joseph W. Foley (254604)
Jean-Christophe Grenier (3186789)
Katherine J. Siddle (707195)
Anne Dumaine (457931)
Vania Yotova (489390)
Zachary P. Johnson (451758)
Robert E. Lanford (206807)
Christopher B. Burge (61242)
Luis B. Barreiro (235196)

September 2016

(A) Distribution of fold changes in gene expression (y-axis, log2 scale) for ge...

Data from: Mixture modeling of transcript abundance classes in natural populations

Hsieh, Wen-Ping
Passador-Gurgel, Gisele
Stone, Eric A.
Gibson, Greg

October 2009

BACKGROUND: Populations diverge in genotype and phenotype under the influence of such evolutionary p...

Expression level fold-change for significant SNP-probe cis- associations shared by pairs of populations.

Barbara E. Stranger (170913)
Stephen B. Montgomery (159816)
Antigone S. Dimas (170915)
Leopold Parts (144647)
Oliver Stegle (170916)
Catherine E. Ingle (170917)
Magda Sekowska (170918)
George Davey Smith (82619)
David Evans (41081)
Maria Gutierrez-Arcelus (170921)
Alkes Price (170926)
Towfique Raj (170931)
James Nisbett (170937)
Alexandra C. Nica (166789)
Claude Beazley (48196)
Richard Durbin (2217)
Panos Deloukas (21564)
Emmanouil T. Dermitzakis (120302)

April 2012

Shown are plots of the absolute value of expression level fold-change between median expression l...

Distribution of fold change and average percent significance rank of 89ADEGS.

Debajyoti Ghosh (841029)
Lili Ding (759980)
Umasundari Sivaprasad (345398)
Esmond Geh (841030)
Jocelyn Biagini Myers (841031)
Jonathan A. Bernstein (841032)
Gurjit K Khurana Hershey (841033)
Tesfaye B. Mersha (841034)

January 2016

Identification and ranking of differentially expressed genes (DEGs) from individual studies using...

Frequency of relative fold-change of probe sets with significant changes in transcript abundance between H and L selection lines, pooled over sexes

Abstract

Extracted data

Frequency of relative fold-change of probe sets with significant changes in transcript abundance between H and L selection lines, pooled over sexes

Abstract

Extracted data

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