Om sequences (green) and matrix-random sequences (blue) for the M00671 matrix representing the TFBS bound by TCF-4 (A) and the M01037 matrix for TFBS bound by GLI1 (C). (B & D) The matrix-random score distributions are compared to the scores for individual TFBS derived from TEs (red) versus the non-repetitive TEs (gray). Data are shown for M00671 TCF-4 (B) and M01037 GLI1 (D).<p><b>Copyright information:</b></p><p>Taken from "Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA"</p><p>http://www.biomedcentral.com/1471-2164/9/226</p><p>BMC Genomics 2008;9():226-226.</p><p>Published online 17 May 2008</p><p>PMCID:PMC2397414.</p><p></p
Abstract Background Scoring DNA sequences against Pos...
Recent experimental and theoretical efforts have highlighted the fact that binding of transcription ...
© 2008 Polavarapu et al; licensee BioMed Central Ltd. The electronic version of this article is the ...
Ted along with the percentages that are expected (dark) based on the background frequencies of the T...
Ted along with the percentages that are expected (dark) based on the background frequencies of the T...
On-repetitive DNA (NR). For each category, conservation levels were determined by averaging across t...
Heir PWMs. Each PFM/PWM represents a human TFBS that has both TE-derived and non-repetitive experime...
Ong with the positions of the repetitive DNA elements (black) at that locus. FOSL1 is encoded on the...
(a) Transcription factor analysis workflow. For each species enhancer classifier, we found TF motifs...
Position-specific scoring matrices (PSSMs) are routinely used to predict transcription factor (TF)-b...
And OPT (natural logarithm, optimized matrix length) for each TF. The vertical axis shows the false-...
International audiencePosition-specific scoring matrices (PSSMs) are routinely used to predict trans...
<p>Prediction of altered transcription factor binding sites due to alleles of rs6136 and rs9332575. ...
Nd OPT (natural logarithm, optimized matrix length) for each TF. The vertical axis shows the false-p...
Background: Advances in sequencing technology have boosted population genomics and made it possible ...
Abstract Background Scoring DNA sequences against Pos...
Recent experimental and theoretical efforts have highlighted the fact that binding of transcription ...
© 2008 Polavarapu et al; licensee BioMed Central Ltd. The electronic version of this article is the ...
Ted along with the percentages that are expected (dark) based on the background frequencies of the T...
Ted along with the percentages that are expected (dark) based on the background frequencies of the T...
On-repetitive DNA (NR). For each category, conservation levels were determined by averaging across t...
Heir PWMs. Each PFM/PWM represents a human TFBS that has both TE-derived and non-repetitive experime...
Ong with the positions of the repetitive DNA elements (black) at that locus. FOSL1 is encoded on the...
(a) Transcription factor analysis workflow. For each species enhancer classifier, we found TF motifs...
Position-specific scoring matrices (PSSMs) are routinely used to predict transcription factor (TF)-b...
And OPT (natural logarithm, optimized matrix length) for each TF. The vertical axis shows the false-...
International audiencePosition-specific scoring matrices (PSSMs) are routinely used to predict trans...
<p>Prediction of altered transcription factor binding sites due to alleles of rs6136 and rs9332575. ...
Nd OPT (natural logarithm, optimized matrix length) for each TF. The vertical axis shows the false-p...
Background: Advances in sequencing technology have boosted population genomics and made it possible ...
Abstract Background Scoring DNA sequences against Pos...
Recent experimental and theoretical efforts have highlighted the fact that binding of transcription ...
© 2008 Polavarapu et al; licensee BioMed Central Ltd. The electronic version of this article is the ...