<p>A) Concatenated alignment of the sequences of five proteins encoded by the core genes (<i>acs/cdhA-D</i> and <i>acs/cdhF</i>) involved in the ACDS complex in the acetyl-CoA pathway. B) Alignment of the sequences of 16S rRNA genes. The complete species names for all abbreviations are listed in the legend of <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0030559#pone.0030559.s003" target="_blank">Figure S3</a>. The numbers indicate the percentage of bootstrap samples supporting the internal branches. Bootstrap values less than 50% were omitted from this figure. Dark green, <i>Thermoanaerobacterales</i>; light green, <i>Clostridiales</i>; black, <i>Desulfobacterales</i>; red, <i>Methanobacteriales</i>; orange, <i>Meth...
<p>FadsA, FadsC1 and FadsC2 are highlighted in black. The tree was constructed using the Neighbour J...
<p>Phylogeny was inferred from a CLUSTAL W alignment generated in the Biology Workbench using 16S rR...
<p>272 prokaryotic species are shown, whose full genome sequence is available, and which represent t...
<p>Scale bar represents 0.1 substitutions per nucleotide position. The <i>Escherichia coli</i> seque...
<p>Genes encoding the enzymes are represented by arrows. The overall structure of the phylogenetic t...
<p>Taxonomic assignments for all sequences (including those not shown in this tree) were made using ...
The relative proportions of R7 core genes (open boxes) and strain-variable open reading frames (ORFs...
<p>Maximum likelihood trees showing the phylogenetic affiliation of OTU and DGGE band sequences to l...
<p>Neighbor-joining cladogram constructed in MEGA5 <a href="http://www.plosone.org/article/info:doi/...
Species that contain pseudo and functional integrons are colored both purple and green. 16S rRNA gen...
<p>Dark purple dots indicate clades in which the complete gene complement for direct reductive synth...
<p>The tree was constructed with 16S rRNA gene sequences from strain A6 (MG589453) and from other ba...
This alignment was used to build a tree with our MAGs, all taxa previously identified by Burgess et ...
<p>(a) Phylogenetic tree of 22 microbial opsin sequences, representing phylogenetic relationship bet...
<p>The numbers on the internal branches indicate the percentage of bootstrap support based on 1,000 ...
<p>FadsA, FadsC1 and FadsC2 are highlighted in black. The tree was constructed using the Neighbour J...
<p>Phylogeny was inferred from a CLUSTAL W alignment generated in the Biology Workbench using 16S rR...
<p>272 prokaryotic species are shown, whose full genome sequence is available, and which represent t...
<p>Scale bar represents 0.1 substitutions per nucleotide position. The <i>Escherichia coli</i> seque...
<p>Genes encoding the enzymes are represented by arrows. The overall structure of the phylogenetic t...
<p>Taxonomic assignments for all sequences (including those not shown in this tree) were made using ...
The relative proportions of R7 core genes (open boxes) and strain-variable open reading frames (ORFs...
<p>Maximum likelihood trees showing the phylogenetic affiliation of OTU and DGGE band sequences to l...
<p>Neighbor-joining cladogram constructed in MEGA5 <a href="http://www.plosone.org/article/info:doi/...
Species that contain pseudo and functional integrons are colored both purple and green. 16S rRNA gen...
<p>Dark purple dots indicate clades in which the complete gene complement for direct reductive synth...
<p>The tree was constructed with 16S rRNA gene sequences from strain A6 (MG589453) and from other ba...
This alignment was used to build a tree with our MAGs, all taxa previously identified by Burgess et ...
<p>(a) Phylogenetic tree of 22 microbial opsin sequences, representing phylogenetic relationship bet...
<p>The numbers on the internal branches indicate the percentage of bootstrap support based on 1,000 ...
<p>FadsA, FadsC1 and FadsC2 are highlighted in black. The tree was constructed using the Neighbour J...
<p>Phylogeny was inferred from a CLUSTAL W alignment generated in the Biology Workbench using 16S rR...
<p>272 prokaryotic species are shown, whose full genome sequence is available, and which represent t...