<p>Branch colouring; black = clade 1 (light blue branch indicates microdiversity in clade 1 (p≥0.9)), red = clade 2 (inc ST-1/RT027), blue = clade 3 (inc ST-22/RT023), orange = clade 4 (inc ST-37/RT017), green = clade 5 (including ST-11/RT078). Leaf colouring; red = STs previously associated with clade 2, blue = STs previously associated with clade 3, brown = STs previously associated with clade 4, green = ST-11 <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0031559#pone.0031559-Dingle1" target="_blank">[22]</a>.</p
<p>(A) partition 21904, 202 aa positions, 12 taxa, -ln L = 3,077.64. (B) partition 22431, 261 aa pos...
<p>On the right side of the figure the carriage isolates are displayed (n = 124). The invasive isola...
<p>A) Corresponds to the global analysis of concatenated sequences. B) O’Brien cluster pruned from A...
<p>Branch colouring; black = clade 1, red = clade 2 (inc ST-1/RT027), blue = clade 3 (inc ST-22/RT02...
<p>Branches for which large numbers of loci have phylogenetically decisive taxon sampling are blue, ...
<p>Top panel represents the order and gene content in the <i>HmB</i> red locus, with vertical lines ...
<p>The <i>predicted</i> phenotypes are indicated by the text color of the taxa: Red = pathogenic, Bl...
Bootstrap support values are reported for nodes over 50%. The traditional species taxa, based on mor...
<p>The numbers in each node represents bootstrap support and posterior probability values based on B...
<p>The phylogenetic tree connects each genotype based on degree of changes required to go from one a...
<p>Branches with strong positive values (high support) are light blue, while branches with low posit...
<p>MG-RAST heatmaps representing the phylogenetic diversity of the four samples at the phylum (left)...
<p>Delimitations are significant only for “Spinose A” (see <a href="http://www.plosone.org/article/i...
<p>The MLE tree of all samples is denoted by MLE (dot in black) in the MDS plot. Individual taxonomi...
<p>(A) Samples classified in sect. <i>Septentrionales</i>; (B) samples classified in sect. <i>Abbrev...
<p>(A) partition 21904, 202 aa positions, 12 taxa, -ln L = 3,077.64. (B) partition 22431, 261 aa pos...
<p>On the right side of the figure the carriage isolates are displayed (n = 124). The invasive isola...
<p>A) Corresponds to the global analysis of concatenated sequences. B) O’Brien cluster pruned from A...
<p>Branch colouring; black = clade 1, red = clade 2 (inc ST-1/RT027), blue = clade 3 (inc ST-22/RT02...
<p>Branches for which large numbers of loci have phylogenetically decisive taxon sampling are blue, ...
<p>Top panel represents the order and gene content in the <i>HmB</i> red locus, with vertical lines ...
<p>The <i>predicted</i> phenotypes are indicated by the text color of the taxa: Red = pathogenic, Bl...
Bootstrap support values are reported for nodes over 50%. The traditional species taxa, based on mor...
<p>The numbers in each node represents bootstrap support and posterior probability values based on B...
<p>The phylogenetic tree connects each genotype based on degree of changes required to go from one a...
<p>Branches with strong positive values (high support) are light blue, while branches with low posit...
<p>MG-RAST heatmaps representing the phylogenetic diversity of the four samples at the phylum (left)...
<p>Delimitations are significant only for “Spinose A” (see <a href="http://www.plosone.org/article/i...
<p>The MLE tree of all samples is denoted by MLE (dot in black) in the MDS plot. Individual taxonomi...
<p>(A) Samples classified in sect. <i>Septentrionales</i>; (B) samples classified in sect. <i>Abbrev...
<p>(A) partition 21904, 202 aa positions, 12 taxa, -ln L = 3,077.64. (B) partition 22431, 261 aa pos...
<p>On the right side of the figure the carriage isolates are displayed (n = 124). The invasive isola...
<p>A) Corresponds to the global analysis of concatenated sequences. B) O’Brien cluster pruned from A...