<p>Only genes that showed significant (<i>p</i>≤0.01) differential regulation under the various conditions are depicted as colored squares. The colors represent the extent of gene expression from low (blue) to high (red) in either condition, as depicted in the color scale. The two outer green diagonal lines in each plot represent the two-fold cutoff. Each sub-plot depicts the differential gene expression between two strains/conditions (shown along the plot axes): Condition A- PAO1 uninduced vs. PAO1 induced; Condition B- PAOΔ<i>ampR</i> uninduced vs. PAOΔ<i>ampR</i> induced; Condition C- PAO1 uninduced vs. PAOΔ<i>ampR</i> uninduced; Condition D- PAO1 induced vs. PAOΔ<i>ampR</i> induced.</p
<p>Microarray analyzed gene data was plotted to compare gene expression differences between botanica...
<p>Here, up-regulation (i.e., ‘+’) and down-regulation (‘-’) are denoted by ‘1’ and ‘0’ in (b), and ...
<p>Distribution of unigenes into different pathways, generated in MapMan, are illustrated. Log<sub>2...
<p>The fold change in the expression of each gene is plotted against mean gene expression. Red point...
The red dots represent genes with up-regulated expression. The green dots represent genes with down-...
<p>Each column represents an experimental condition, and each row represents a gene that is differen...
<p>This plot depicts fold change vs. mean expression. Points depict genes, with red indicating those...
<p>The blue dots that differed by less than two fold between the two libraries, defined “no differen...
<p>(A, C). Volcano diagrams of DEGs. Spots above the threshold line (<i>Q</i>-value = 0.05), indicat...
<p>Points in red indicate significance at an FDR of 10%. Points with a mean counts below the dashed ...
<p>Column indicates H9 and P50 strains, row represent a gene. Expression levels are shown in differe...
<p>Significantly differentially expressed genes are those that are significantly up-regulated (red) ...
Expression levels are indicated by a color scale and represent normalized differences between infect...
<p>The expression patterns of the genes encoding the differentially expressed proteins were compared...
<p>Visualization of differentially expressed gene transcription (scatter plot and volcanic plot) bet...
<p>Microarray analyzed gene data was plotted to compare gene expression differences between botanica...
<p>Here, up-regulation (i.e., ‘+’) and down-regulation (‘-’) are denoted by ‘1’ and ‘0’ in (b), and ...
<p>Distribution of unigenes into different pathways, generated in MapMan, are illustrated. Log<sub>2...
<p>The fold change in the expression of each gene is plotted against mean gene expression. Red point...
The red dots represent genes with up-regulated expression. The green dots represent genes with down-...
<p>Each column represents an experimental condition, and each row represents a gene that is differen...
<p>This plot depicts fold change vs. mean expression. Points depict genes, with red indicating those...
<p>The blue dots that differed by less than two fold between the two libraries, defined “no differen...
<p>(A, C). Volcano diagrams of DEGs. Spots above the threshold line (<i>Q</i>-value = 0.05), indicat...
<p>Points in red indicate significance at an FDR of 10%. Points with a mean counts below the dashed ...
<p>Column indicates H9 and P50 strains, row represent a gene. Expression levels are shown in differe...
<p>Significantly differentially expressed genes are those that are significantly up-regulated (red) ...
Expression levels are indicated by a color scale and represent normalized differences between infect...
<p>The expression patterns of the genes encoding the differentially expressed proteins were compared...
<p>Visualization of differentially expressed gene transcription (scatter plot and volcanic plot) bet...
<p>Microarray analyzed gene data was plotted to compare gene expression differences between botanica...
<p>Here, up-regulation (i.e., ‘+’) and down-regulation (‘-’) are denoted by ‘1’ and ‘0’ in (b), and ...
<p>Distribution of unigenes into different pathways, generated in MapMan, are illustrated. Log<sub>2...