Genome-wide association analyses for females and males (treatments pooled).

<p>All SNPs from single marker analyses with a nominal <i>P</i><10⁻⁵ are shown. Associations based on survival on paraquat are depicted by red dots, survival on MSB by blue dots, treatments pooled by black dots and SNP by treatment interaction by green dots. The lower triangle depicts the degree of LD between SNPs as measured by <i>r²</i>, with the five major chromosome arms demarcated by the black lines. The heat map indicates the magnitude of LD with red corresponding to complete LD and blue to absence of LD. The upper panels show the significance threshold (−log₁₀<i>P</i>), the effect size in phenotypic standard deviation units (<i>a</i>/<i>σ_P</i>), and the minor allele frequency (MAF). (A) Females. (B) Males.