Proteomic Analysis of Ripening Tomato Fruit Infected by <i>Botrytis cinerea</i>

<i>Botrytis cinerea</i>, a model necrotrophic fungal pathogen that causes gray mold as it infects different organs on more than 200 plant species, is a significant contributor to postharvest rot in fresh fruit and vegetables, including tomatoes. By describing host and pathogen proteomes simultaneously in infected tissues, the plant proteins that provide resistance and allow susceptibility and the pathogen proteins that promote colonization and facilitate quiescence can be identified. This study characterizes fruit and fungal proteins solubilized in the <i>B. cinerea</i>–tomato interaction using shotgun proteomics. Mature green, red ripe wild type and <i>ripening inhibited (rin)</i> mutant tomato fruit were infected with <i>B. cinerea</i> B05.10, and the fruit and fungal proteomes were identified concurrently 3 days postinfection. One hundred eighty-six tomato proteins were identified in common among red ripe and red ripe-equivalent <i>ripening inhibited</i> (<i>rin)</i> mutant tomato fruit infected by <i>B. cinerea</i>. However, the limited infections by <i>B. cinerea</i> of mature green wild type fruit resulted in 25 and 33% fewer defense-related tomato proteins than in red and <i>rin</i> fruit, respectively. In contrast, the ripening stage of genotype of the fruit infected did not affect the secreted proteomes of <i>B. cinerea</i>. The composition of the collected proteins populations and the putative functions of the identified proteins argue for their role in plant–pathogen interactions