<p>For rescaled activator concentrations and corresponding to a point ‘above’ (‘below’) the hyperbolic lines the thermostatistical model predicts a greater-than-additive (less-than-additive) transcriptional response. Solid line: re-analysis of the study by Joung et al. <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0034439#pone.0034439-Joung2" target="_blank">[6]</a> of a engineered promoter regulated by the transcription factors and cI. Dashed line: re-analysis of the study by Lee et al. <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0034439#pone.0034439-Lee1" target="_blank">[9]</a> involving a promoter regulated by the transcription factors and .</p
<p>Figure (A) shows three hypothetical promoters for which the predictions of the promoter design ar...
<p>(A) Density plot for 100,000 simulation results at each time point from 0 to 60 minutes for trans...
We derive a statistical model of transcriptional activation using equilibrium thermodynamics of chem...
<p>Solid lines labeled ‘F’ and ‘N’ were computed from Eq. (82) of <a href="http://www.plosone.org/ar...
<p>The solid line ‘DS’ was computed from Eq. (25) and represents the fold change of the transcriptio...
<p>The thermostatistical model of transcription initiation predicts different dose response patterns...
<p>Bars labeled ‘D’ represent the magnitude of a reported greater-than-additive effect. Panels A–B, ...
<p>Cooperative effects are caused by the nonlinearity of the RNA polymerase binding probability func...
<p>The function was computed from Eqs. (15,18) for the transcription factor impact . The transcript...
<p>Summary of cases in which the thermostatistical model predicts greater-than-additive and less-tha...
<p>Less-than-additive and greater-than-additive effects are caused by three-body-interactions betwee...
Summary: Organisms regulate gene expression through changes in the activity of transcription factors...
A challenge in quantitative biology is to predict output patterns of gene expression from knowledge ...
<div><p>Understanding how regulatory elements control mammalian gene expression is a challenge of po...
<p>(<b>A</b>) Thermodynamic modeling of promoter states. Depending on the transcription factor conce...
<p>Figure (A) shows three hypothetical promoters for which the predictions of the promoter design ar...
<p>(A) Density plot for 100,000 simulation results at each time point from 0 to 60 minutes for trans...
We derive a statistical model of transcriptional activation using equilibrium thermodynamics of chem...
<p>Solid lines labeled ‘F’ and ‘N’ were computed from Eq. (82) of <a href="http://www.plosone.org/ar...
<p>The solid line ‘DS’ was computed from Eq. (25) and represents the fold change of the transcriptio...
<p>The thermostatistical model of transcription initiation predicts different dose response patterns...
<p>Bars labeled ‘D’ represent the magnitude of a reported greater-than-additive effect. Panels A–B, ...
<p>Cooperative effects are caused by the nonlinearity of the RNA polymerase binding probability func...
<p>The function was computed from Eqs. (15,18) for the transcription factor impact . The transcript...
<p>Summary of cases in which the thermostatistical model predicts greater-than-additive and less-tha...
<p>Less-than-additive and greater-than-additive effects are caused by three-body-interactions betwee...
Summary: Organisms regulate gene expression through changes in the activity of transcription factors...
A challenge in quantitative biology is to predict output patterns of gene expression from knowledge ...
<div><p>Understanding how regulatory elements control mammalian gene expression is a challenge of po...
<p>(<b>A</b>) Thermodynamic modeling of promoter states. Depending on the transcription factor conce...
<p>Figure (A) shows three hypothetical promoters for which the predictions of the promoter design ar...
<p>(A) Density plot for 100,000 simulation results at each time point from 0 to 60 minutes for trans...
We derive a statistical model of transcriptional activation using equilibrium thermodynamics of chem...