<p>The solid line ‘DS’ was computed from Eq. (25) and represents the fold change of the transcriptional activity of a double binding site promoter for a given relative transcription factor concentrations . The solid line labeled ‘SS’ represents the transcriptional activity of a corresponding single binding site promoter (as computed from Eq. (82) given in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0034439#pone.0034439.s001" target="_blank">Text S1</a>). The dashed line represents two times the the activity calculated for the single binding site promoter. Diamonds indicate the critical transcription factor concentrations calculated from Eq. (91) in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.p...
<p>(A) Considering the top 50 target promoters predicted by each of four methods, ChIP-chip, our seq...
<p>Horizontal arrows represent mass flow by chemical reaction or diffusion. Vertical arrows pointing...
A) A model of regulation by Bicoid transcription factor (TF) binding to multiple binding sites on th...
<p>Solid lines labeled ‘F’ and ‘N’ were computed from Eq. (82) of <a href="http://www.plosone.org/ar...
<p>The thermostatistical model of transcription initiation predicts different dose response patterns...
<p>For rescaled activator concentrations and corresponding to a point ‘above’ (‘below’) the hyperb...
<p>(<b>A</b>) Thermodynamic modeling of promoter states. Depending on the transcription factor conce...
<p><b>A</b>. Gene regulation, with two transcription factors (TFs), <i>L</i><sub>1</sub> and <i>L</i...
<p>(<b>A</b>) Schematic representation of double-mutant promoters which lack two transcription facto...
<p>(A) One kilobase upstream of the transcription start site of YPL192C is depicted, with PWM-scores...
Transcription factor binding sites (TFBS) are being discovered at a rapid pace1, 2. We must now begi...
Understanding transcriptional regulation quantitatively is a crucial step towards uncovering and ult...
Figures in the first column: schematic of the experiment 2: comparison of the expression ranges of r...
<p>(A) Tabulated view of all matched matrix sequences for transcription factors (TF) as displayed in...
<p>(A) Example of <i>in-silico</i> model of DNA-protein complex for the transcription factor EGR1 (P...
<p>(A) Considering the top 50 target promoters predicted by each of four methods, ChIP-chip, our seq...
<p>Horizontal arrows represent mass flow by chemical reaction or diffusion. Vertical arrows pointing...
A) A model of regulation by Bicoid transcription factor (TF) binding to multiple binding sites on th...
<p>Solid lines labeled ‘F’ and ‘N’ were computed from Eq. (82) of <a href="http://www.plosone.org/ar...
<p>The thermostatistical model of transcription initiation predicts different dose response patterns...
<p>For rescaled activator concentrations and corresponding to a point ‘above’ (‘below’) the hyperb...
<p>(<b>A</b>) Thermodynamic modeling of promoter states. Depending on the transcription factor conce...
<p><b>A</b>. Gene regulation, with two transcription factors (TFs), <i>L</i><sub>1</sub> and <i>L</i...
<p>(<b>A</b>) Schematic representation of double-mutant promoters which lack two transcription facto...
<p>(A) One kilobase upstream of the transcription start site of YPL192C is depicted, with PWM-scores...
Transcription factor binding sites (TFBS) are being discovered at a rapid pace1, 2. We must now begi...
Understanding transcriptional regulation quantitatively is a crucial step towards uncovering and ult...
Figures in the first column: schematic of the experiment 2: comparison of the expression ranges of r...
<p>(A) Tabulated view of all matched matrix sequences for transcription factors (TF) as displayed in...
<p>(A) Example of <i>in-silico</i> model of DNA-protein complex for the transcription factor EGR1 (P...
<p>(A) Considering the top 50 target promoters predicted by each of four methods, ChIP-chip, our seq...
<p>Horizontal arrows represent mass flow by chemical reaction or diffusion. Vertical arrows pointing...
A) A model of regulation by Bicoid transcription factor (TF) binding to multiple binding sites on th...