<p>(A) The distances of connection sites between the residues of GRDBD dimer and bases of DNA for GRDBD+DNA, Poly+DNA+GRDBD and alloDNA+GRDBD models; (B) The time-average structure of the GRDBD+DNA model, the final structure of the Poly+DNA+GRDBD model and the final structure of the alloDNA+GRDBD model in the simulations along with the average distances of the connection sites between the two α1 helices of GRDBD dimer and DNA molecule.</p
A method is described to extract a complete set of sequence-dependent material parameters for rigid ...
We develop a robust coarse-grained model for single- and double-stranded DNA by representing each nu...
For a molecule of biological importance, one expects a strong correlation between the three-dimensio...
<p>The center image is the time-dependence of distances at the connection sites between the residues...
<p>The minor and major groove widths for the time-average structures of the DNA conformations for (A...
<p>(a) The interhelical angles (°) between the H1 helices, and (b) the distances (Å) between the C a...
<p>Interhelical angles (A) and interhelical distances (B) between helix2 and helix3 in Smad1 along w...
<p>Average simulated structures for (a) the C<sub>bHLH</sub>+B<sub>bHLH</sub> model, (b) the C<sub>b...
There are several tools to improve initial structural estimates of a molecule under study. The metho...
Abstract. The conformational flexibility inherent in the polynucleotide chain plays an important rol...
The conformational flexibility inherent in the polynucleotide chain plays an important role in decid...
<p>(A) The cartoon representation of 11.5 TAL repeats and the DNA. The superhelical pitch of dHax3 i...
<p>Three representative time course of the RMSD of the nucleosomal DNA from the reference structure ...
<p><b>(A-C)</b> Distances measured between the centres of mass (COM) of the nucleotide binding domai...
Abstract: We propose a dynamical model for the secondary structure of DNA, which is based on the fin...
A method is described to extract a complete set of sequence-dependent material parameters for rigid ...
We develop a robust coarse-grained model for single- and double-stranded DNA by representing each nu...
For a molecule of biological importance, one expects a strong correlation between the three-dimensio...
<p>The center image is the time-dependence of distances at the connection sites between the residues...
<p>The minor and major groove widths for the time-average structures of the DNA conformations for (A...
<p>(a) The interhelical angles (°) between the H1 helices, and (b) the distances (Å) between the C a...
<p>Interhelical angles (A) and interhelical distances (B) between helix2 and helix3 in Smad1 along w...
<p>Average simulated structures for (a) the C<sub>bHLH</sub>+B<sub>bHLH</sub> model, (b) the C<sub>b...
There are several tools to improve initial structural estimates of a molecule under study. The metho...
Abstract. The conformational flexibility inherent in the polynucleotide chain plays an important rol...
The conformational flexibility inherent in the polynucleotide chain plays an important role in decid...
<p>(A) The cartoon representation of 11.5 TAL repeats and the DNA. The superhelical pitch of dHax3 i...
<p>Three representative time course of the RMSD of the nucleosomal DNA from the reference structure ...
<p><b>(A-C)</b> Distances measured between the centres of mass (COM) of the nucleotide binding domai...
Abstract: We propose a dynamical model for the secondary structure of DNA, which is based on the fin...
A method is described to extract a complete set of sequence-dependent material parameters for rigid ...
We develop a robust coarse-grained model for single- and double-stranded DNA by representing each nu...
For a molecule of biological importance, one expects a strong correlation between the three-dimensio...