Genes downregulated after transfection of HeLa cells with miR-133b and TNFα stimulation and predicted to be potential miR targets.1

Identification of a set of miRNAs differentially expressed in transiently TIA-depleted HeLa cells by genome-wide profiling

Sánchez-Jiménez, Carmen
Carrascoso, Isabel
Barrero, Juan
Izquierdo, José M.

March 2013

Abstract Background T-cell intracellular antigen (TIA) proteins function as regulators of cell homeo...

Number of predicted miR-103a-3p and moR-103a-2-3p targets in the sets of genes down-regulated by both mimics, down-regulated by only miR-103a-3p and down-regulated by moR-103a-2-3p.

Suvi Asikainen (714687)
Liisa Heikkinen (714688)
Juuso Juhila (216435)
Frida Holm (233797)
Jere Weltner (465680)
Ras Trokovic (465683)
Milla Mikkola (465681)
Sanna Toivonen (465679)
Diego Balboa (714689)
Riina Lampela (714690)
Katherine Icay (216440)
Timo Tuuri (465686)
Timo Otonkoski (250629)
Garry Wong (19212)
Outi Hovatta (51032)

March 2015

The analysis was made only for genes with an annotated 3’ UTR in GRCh37/hg19.Number of pre...

Overexpression of miR-221 downregulated genes analysis.

Hongqiang Du (5613836)
Shuang Cui (2428774)
Yunfei Li (652635)
Guang Yang (154978)
Peiyan Wang (5613839)
Erol Fikrig (73442)
Fuping You (3713755)

August 2018

(A) HEK 293T cells were transfected with an IFNβ-Luc plasmid and the indicated plasmids. Cells we...

Apoptosis regulatory proteins downregulated in miR-133b-transfected TNFα-stimulated HeLa cells.

Juan P. Patron (169439)
Annika Fendler (169443)
Matthias Bild (67518)
Ulrike Jung (169452)
Henrik Müller (169457)
Magnus Ø. Arntzen (169464)
Chloe Piso (169473)
Carsten Stephan (169480)
Bernd Thiede (169487)
Hans-Joachim Mollenkopf (157038)
Klaus Jung (65489)
Stefan H. E. Kaufmann (149315)
Jörg Schreiber (169502)

April 2012

1Compared to ctrl miR-transfected and TNFα-stimulated cells. P-value<0.01.2As predicted by...

Correlation between target prediction and gene expression change after miRNA transfection to HeLa cells.

Albert Pla (5513558)
Xiangfu Zhong (5513555)
Simon Rayner (117650)

July 2018

A) Gene expression fold-change distribution after miRNA transfection to HeLa cells. The distribut...

Functional implications for miRNA target enrichment in specific hierarchical clusters.

Cheng-Kang Chiang (607367)
Neel Mehta (645839)
Abhilasha Patel (645840)
Peng Zhang (2071)
Zhibin Ning (645841)
Janice Mayne (93512)
Warren Y. L. Sun (645842)
Hai-Ying M. Cheng (607369)
Daniel Figeys (25334)

October 2014

(A) Distribution of the number of predicted miR-133ab murine target genes in the six hiera...

Downregulation of genes on PAA by specific miRNAs predicted.

Long T. Vu (703146)
Vic Keschrumrus (703147)
Xi Zhang (83736)
Jiang F. Zhong (185216)
Qingning Su (363844)
Mustafa H. Kabeer (703148)
William G. Loudon (703149)
Shengwen Calvin Li (703150)

March 2015

A random samples of 50 p robes upregulated on PAA (FC > 2) was compared to 50 probes highly downr...

Genes over 1.5-fold downregulated in response to miR-204 and/or -379 versus negative control Pre-miR.

Sirkku Pollari (163265)
Suvi-Katri Leivonen (163266)
Merja Perälä (155133)
Vidal Fey (155117)
Sanna-Maria Käkönen (163270)
Olli Kallioniemi (69616)

May 2012

RNA samples for genome-wide gene expression analysis were collected 24 hours after MDA-MB-231(SA)...

miR-133b acts proapoptotically on HeLa cells stimulated with death receptor (DR) ligands.

Juan P. Patron (169439)
Annika Fendler (169443)
Matthias Bild (67518)
Ulrike Jung (169452)
Henrik Müller (169457)
Magnus Ø. Arntzen (169464)
Chloe Piso (169473)
Carsten Stephan (169480)
Bernd Thiede (169487)
Hans-Joachim Mollenkopf (157038)
Klaus Jung (65489)
Stefan H. E. Kaufmann (149315)
Jörg Schreiber (169502)

April 2012

Cells were transfected with miR-133b alone or together with a control antimiR (ctrl αmiR) or a sp...

Downregulated genes upon miR-181a overexpression.

Jia Fei (90457)
Yumin Li (177247)
Xuejiao Zhu (177257)
Xiaochuang Luo (177260)

March 2012

miR-181a targets were identified by combining TargetScan software prediction and expression profi...

Downregulation of predicted miR-34a target genes in GIST-T1 cells.

Mai Isosaka (775806)
Takeshi Niinuma (775807)
Masanori Nojima (52788)
Masahiro Kai (775808)
Eiichiro Yamamoto (52787)
Reo Maruyama (52782)
Takayuki Nobuoka (775809)
Toshirou Nishida (775810)
Tatsuo Kanda (234184)
Takahiro Taguchi (162032)
Tadashi Hasegawa (65726)
Takashi Tokino (52798)
Koichi Hirata (52794)
Hiromu Suzuki (52785)
Yasuhisa Shinomura (52797)

July 2015

(A) Venn diagram for genes downregulated by ectopic miR-34a expression in GIST-T1 cells (>1.5-fol...

Analysis of genes dysregulated by over-expression, or knock-down, in resting EOC 13.31 cells using either miR-146a mimics or anti-miRs.

Reuben Saba (67091)
Shantel Gushue (332453)
Rhiannon L. C. H. Huzarewich (269623)
Kathy Manguiat (332456)
Sarah Medina (332457)
Catherine Robertson (269625)
Stephanie A. Booth (121045)

February 2013

Genes listed in bold are those that are bioinformatically predicted to be targets of miR-146a usi...

MicroRNAs predicted from sets of genes downregulated on PAA were significant different from genes unregulated on PAA.

Long T. Vu (703146)
Vic Keschrumrus (703147)
Xi Zhang (83736)
Jiang F. Zhong (185216)
Qingning Su (363844)
Mustafa H. Kabeer (703148)
William G. Loudon (703149)
Shengwen Calvin Li (703150)

March 2015

MicroRNA targets from genes sets that were, downregulated (subset of genes FC < -2), highly downr...

miR-100 target genes identified in epithelial cells by microarray analysis and bioinformatics prediction.

Dan Chen (32468)
Zujian Chen (388556)
Yi Jin (38575)
Dragan Dragas (415918)
Leitao Zhang (94098)
Barima S. Adjei (492283)
Anxun Wang (94096)
Yang Dai (36730)
Xiaofeng Zhou (415920)

December 2013

aGene names in bold font were genes that down-regulated in 4 out of 5 microRNA transfection exper...

The TGF-β signaling pathway is predicted to be targeted by many significantly differentially expressed miRNAs.

Feng Zhao (90241)
Zhe Wang (41178)
Hongxin Lang (740005)
Xiaoyu Liu (206872)
Dianbao Zhang (740006)
Xiliang Wang (131868)
Tao Zhang (43681)
Rui Wang (52434)
Ping Shi (385845)
Xining Pang (740007)

May 2015

(a) Multiple miRNAs including novel miRNA candidates are predicted to target each of the genes im...

Identification of a set of miRNAs differentially expressed in transiently TIA-depleted HeLa cells by genome-wide profiling

Sánchez-Jiménez, Carmen
Carrascoso, Isabel
Barrero, Juan
Izquierdo, José M.

March 2013

Abstract Background T-cell intracellular antigen (TIA) proteins function as regulators of cell homeo...

Number of predicted miR-103a-3p and moR-103a-2-3p targets in the sets of genes down-regulated by both mimics, down-regulated by only miR-103a-3p and down-regulated by moR-103a-2-3p.

Suvi Asikainen (714687)
Liisa Heikkinen (714688)
Juuso Juhila (216435)
Frida Holm (233797)
Jere Weltner (465680)
Ras Trokovic (465683)
Milla Mikkola (465681)
Sanna Toivonen (465679)
Diego Balboa (714689)
Riina Lampela (714690)
Katherine Icay (216440)
Timo Tuuri (465686)
Timo Otonkoski (250629)
Garry Wong (19212)
Outi Hovatta (51032)

March 2015

The analysis was made only for genes with an annotated 3’ UTR in GRCh37/hg19.Number of pre...

Overexpression of miR-221 downregulated genes analysis.

Hongqiang Du (5613836)
Shuang Cui (2428774)
Yunfei Li (652635)
Guang Yang (154978)
Peiyan Wang (5613839)
Erol Fikrig (73442)
Fuping You (3713755)

August 2018

(A) HEK 293T cells were transfected with an IFNβ-Luc plasmid and the indicated plasmids. Cells we...

Apoptosis regulatory proteins downregulated in miR-133b-transfected TNFα-stimulated HeLa cells.

Juan P. Patron (169439)
Annika Fendler (169443)
Matthias Bild (67518)
Ulrike Jung (169452)
Henrik Müller (169457)
Magnus Ø. Arntzen (169464)
Chloe Piso (169473)
Carsten Stephan (169480)
Bernd Thiede (169487)
Hans-Joachim Mollenkopf (157038)
Klaus Jung (65489)
Stefan H. E. Kaufmann (149315)
Jörg Schreiber (169502)

April 2012

1Compared to ctrl miR-transfected and TNFα-stimulated cells. P-value<0.01.2As predicted by...

Correlation between target prediction and gene expression change after miRNA transfection to HeLa cells.

Albert Pla (5513558)
Xiangfu Zhong (5513555)
Simon Rayner (117650)

July 2018

A) Gene expression fold-change distribution after miRNA transfection to HeLa cells. The distribut...

Functional implications for miRNA target enrichment in specific hierarchical clusters.

Cheng-Kang Chiang (607367)
Neel Mehta (645839)
Abhilasha Patel (645840)
Peng Zhang (2071)
Zhibin Ning (645841)
Janice Mayne (93512)
Warren Y. L. Sun (645842)
Hai-Ying M. Cheng (607369)
Daniel Figeys (25334)

October 2014

(A) Distribution of the number of predicted miR-133ab murine target genes in the six hiera...

Downregulation of genes on PAA by specific miRNAs predicted.

Long T. Vu (703146)
Vic Keschrumrus (703147)
Xi Zhang (83736)
Jiang F. Zhong (185216)
Qingning Su (363844)
Mustafa H. Kabeer (703148)
William G. Loudon (703149)
Shengwen Calvin Li (703150)

March 2015

A random samples of 50 p robes upregulated on PAA (FC > 2) was compared to 50 probes highly downr...

Genes over 1.5-fold downregulated in response to miR-204 and/or -379 versus negative control Pre-miR.

Sirkku Pollari (163265)
Suvi-Katri Leivonen (163266)
Merja Perälä (155133)
Vidal Fey (155117)
Sanna-Maria Käkönen (163270)
Olli Kallioniemi (69616)

May 2012

RNA samples for genome-wide gene expression analysis were collected 24 hours after MDA-MB-231(SA)...

miR-133b acts proapoptotically on HeLa cells stimulated with death receptor (DR) ligands.

Juan P. Patron (169439)
Annika Fendler (169443)
Matthias Bild (67518)
Ulrike Jung (169452)
Henrik Müller (169457)
Magnus Ø. Arntzen (169464)
Chloe Piso (169473)
Carsten Stephan (169480)
Bernd Thiede (169487)
Hans-Joachim Mollenkopf (157038)
Klaus Jung (65489)
Stefan H. E. Kaufmann (149315)
Jörg Schreiber (169502)

April 2012

Cells were transfected with miR-133b alone or together with a control antimiR (ctrl αmiR) or a sp...

Downregulated genes upon miR-181a overexpression.

Jia Fei (90457)
Yumin Li (177247)
Xuejiao Zhu (177257)
Xiaochuang Luo (177260)

March 2012

miR-181a targets were identified by combining TargetScan software prediction and expression profi...

Downregulation of predicted miR-34a target genes in GIST-T1 cells.

Mai Isosaka (775806)
Takeshi Niinuma (775807)
Masanori Nojima (52788)
Masahiro Kai (775808)
Eiichiro Yamamoto (52787)
Reo Maruyama (52782)
Takayuki Nobuoka (775809)
Toshirou Nishida (775810)
Tatsuo Kanda (234184)
Takahiro Taguchi (162032)
Tadashi Hasegawa (65726)
Takashi Tokino (52798)
Koichi Hirata (52794)
Hiromu Suzuki (52785)
Yasuhisa Shinomura (52797)

July 2015

(A) Venn diagram for genes downregulated by ectopic miR-34a expression in GIST-T1 cells (>1.5-fol...

Analysis of genes dysregulated by over-expression, or knock-down, in resting EOC 13.31 cells using either miR-146a mimics or anti-miRs.

Reuben Saba (67091)
Shantel Gushue (332453)
Rhiannon L. C. H. Huzarewich (269623)
Kathy Manguiat (332456)
Sarah Medina (332457)
Catherine Robertson (269625)
Stephanie A. Booth (121045)

February 2013

Genes listed in bold are those that are bioinformatically predicted to be targets of miR-146a usi...

MicroRNAs predicted from sets of genes downregulated on PAA were significant different from genes unregulated on PAA.

Long T. Vu (703146)
Vic Keschrumrus (703147)
Xi Zhang (83736)
Jiang F. Zhong (185216)
Qingning Su (363844)
Mustafa H. Kabeer (703148)
William G. Loudon (703149)
Shengwen Calvin Li (703150)

March 2015

MicroRNA targets from genes sets that were, downregulated (subset of genes FC < -2), highly downr...

miR-100 target genes identified in epithelial cells by microarray analysis and bioinformatics prediction.

Dan Chen (32468)
Zujian Chen (388556)
Yi Jin (38575)
Dragan Dragas (415918)
Leitao Zhang (94098)
Barima S. Adjei (492283)
Anxun Wang (94096)
Yang Dai (36730)
Xiaofeng Zhou (415920)

December 2013

aGene names in bold font were genes that down-regulated in 4 out of 5 microRNA transfection exper...

The TGF-β signaling pathway is predicted to be targeted by many significantly differentially expressed miRNAs.

Feng Zhao (90241)
Zhe Wang (41178)
Hongxin Lang (740005)
Xiaoyu Liu (206872)
Dianbao Zhang (740006)
Xiliang Wang (131868)
Tao Zhang (43681)
Rui Wang (52434)
Ping Shi (385845)
Xining Pang (740007)

May 2015

(a) Multiple miRNAs including novel miRNA candidates are predicted to target each of the genes im...

Identification of a set of miRNAs differentially expressed in transiently TIA-depleted HeLa cells by genome-wide profiling

Sánchez-Jiménez, Carmen
Carrascoso, Isabel
Barrero, Juan
Izquierdo, José M.

March 2013

Abstract Background T-cell intracellular antigen (TIA) proteins function as regulators of cell homeo...

Number of predicted miR-103a-3p and moR-103a-2-3p targets in the sets of genes down-regulated by both mimics, down-regulated by only miR-103a-3p and down-regulated by moR-103a-2-3p.

Suvi Asikainen (714687)
Liisa Heikkinen (714688)
Juuso Juhila (216435)
Frida Holm (233797)
Jere Weltner (465680)
Ras Trokovic (465683)
Milla Mikkola (465681)
Sanna Toivonen (465679)
Diego Balboa (714689)
Riina Lampela (714690)
Katherine Icay (216440)
Timo Tuuri (465686)
Timo Otonkoski (250629)
Garry Wong (19212)
Outi Hovatta (51032)

March 2015

The analysis was made only for genes with an annotated 3’ UTR in GRCh37/hg19.Number of pre...

Overexpression of miR-221 downregulated genes analysis.

Hongqiang Du (5613836)
Shuang Cui (2428774)
Yunfei Li (652635)
Guang Yang (154978)
Peiyan Wang (5613839)
Erol Fikrig (73442)
Fuping You (3713755)

August 2018

(A) HEK 293T cells were transfected with an IFNβ-Luc plasmid and the indicated plasmids. Cells we...

Genes downregulated after transfection of HeLa cells with miR-133b and TNFα stimulation and predicted to be potential miR targets.<sup>1</sup>

Abstract

Extracted data

Genes downregulated after transfection of HeLa cells with miR-133b and TNFα stimulation and predicted to be potential miR targets.<sup>1</sup>

Abstract

Extracted data

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