<p>Ratio of gene expression between Tregs and CD25− from each subject was first obtained and averaged for each group before comparison to the Low HLA risk control subject group. A) fold change genes expression in the High HLA risk healthy control (n = 8), Ab+ subjects (n = 4), RO T1D subjects (n = 4), relative to Low HLA risk subject group (n = 5), B) fold change of genes uniquely expressed in RO T1D (red bars), Ab+ subjects (dark grey bars) and High HLA risk subjects (light grey bars) relative to Low HLA risk group. C) Genes downregulated in High HLA risk group compared to Low HLA risk group. Cutoff value for presentation of overexpressed genes was >5-fold. * - anti-apoptotic genes.</p
<p>(A) <i>TNFR1</i>, (B) <i>TNFR2</i>, (C) <i>FLIPs</i>, (D) <i>FLICE</i>. TST positivity was define...
<p>(A, C). Volcano diagrams of DEGs. Spots above the threshold line (<i>Q</i>-value = 0.05), indicat...
<p>(a) Examples of differential expression analysis results for the genes <i>HCST</i> and <i>IRF4</i...
<p>In High HLA risk both healthy control and LS T1D subjects, increased Treg apoptosis significantly...
(A)Venn diagram showing that 2,688 differentially expressed genes (LFC ±0.58; FDR p-value ≤ 0.05) ov...
<p>The enrichment plots of the immunologic gene expression signatures of activated microglia are sep...
Volcano plots showing significantly downregulated (the thresholds are FDR -0.5) genes in green and ...
<p>Haplotype analysis for HLA gene polymorphisms between patients (Group I+II+III+IV) and controls.<...
The human leukocyte antigen (HLA) locus plays a critical role in complex traits spanning autoimmune ...
A: Volcano plots of differential gene expression analysis of each T-PLL subgroup in comparison to th...
(A) For 186 individuals a single Vpu clone from chronic untreated infection was measured for ability...
(A) Euclidean clustering demonstrates separation between the chronic T5 group compared with the norm...
<p>(A) Heatmap of processed expression values for 368 dysregulated genes showing absolute logFC ≥ 1 ...
<p><sup>1</sup>SPL, spleen low IR; SPH, spleen high IR; SKL, skin low IR; SKH, skin high IR.</p><p>S...
Differentially expressed genes with high fold-change (>4.0) for HRSV group in comparison with HRV gr...
<p>(A) <i>TNFR1</i>, (B) <i>TNFR2</i>, (C) <i>FLIPs</i>, (D) <i>FLICE</i>. TST positivity was define...
<p>(A, C). Volcano diagrams of DEGs. Spots above the threshold line (<i>Q</i>-value = 0.05), indicat...
<p>(a) Examples of differential expression analysis results for the genes <i>HCST</i> and <i>IRF4</i...
<p>In High HLA risk both healthy control and LS T1D subjects, increased Treg apoptosis significantly...
(A)Venn diagram showing that 2,688 differentially expressed genes (LFC ±0.58; FDR p-value ≤ 0.05) ov...
<p>The enrichment plots of the immunologic gene expression signatures of activated microglia are sep...
Volcano plots showing significantly downregulated (the thresholds are FDR -0.5) genes in green and ...
<p>Haplotype analysis for HLA gene polymorphisms between patients (Group I+II+III+IV) and controls.<...
The human leukocyte antigen (HLA) locus plays a critical role in complex traits spanning autoimmune ...
A: Volcano plots of differential gene expression analysis of each T-PLL subgroup in comparison to th...
(A) For 186 individuals a single Vpu clone from chronic untreated infection was measured for ability...
(A) Euclidean clustering demonstrates separation between the chronic T5 group compared with the norm...
<p>(A) Heatmap of processed expression values for 368 dysregulated genes showing absolute logFC ≥ 1 ...
<p><sup>1</sup>SPL, spleen low IR; SPH, spleen high IR; SKL, skin low IR; SKH, skin high IR.</p><p>S...
Differentially expressed genes with high fold-change (>4.0) for HRSV group in comparison with HRV gr...
<p>(A) <i>TNFR1</i>, (B) <i>TNFR2</i>, (C) <i>FLIPs</i>, (D) <i>FLICE</i>. TST positivity was define...
<p>(A, C). Volcano diagrams of DEGs. Spots above the threshold line (<i>Q</i>-value = 0.05), indicat...
<p>(a) Examples of differential expression analysis results for the genes <i>HCST</i> and <i>IRF4</i...