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Inter-individual variation in infant stool samples in the proportion of the major microbial phylum/family/species.

Francesca Turroni (133919)
Clelia Peano (67208)
Daniel A. Pass (165160)
Elena Foroni (133927)
Marco Severgnini (165168)
Marcus J. Claesson (152740)
Colm Kerr (165174)
Jonathan Hourihane (165180)
Deirdre Murray (165185)
Fabio Fuligni (165190)
Miguel Gueimonde (165195)
Abelardo Margolles (133949)
Gianluca De Bellis (31121)
Paul W. O’Toole (152760)
Douwe van Sinderen (62590)
Julian R. Marchesi (165208)
Marco Ventura (133957)

Publication date

May 2012

DOI

10.1371/journal.pone.0036957.g004

Abstract

<p>The core faecal microbiota of infant subjects at the levels of phylum, family and genus is indicated at the bottom of each inset.</p

Extracted data

Related items

Diversity of bifidobacteria within the infant gut microbiota

TURRONI, FRANCESCA
VENTURA, Marco
C. Peano
D. Pass
E. Foroni
M. Severgnini
M. Claesson
C. Kerr
J. Hourihane
D. Murray
F. Fuligni
M. Gueimonde
A. Margolles
G. De Bellis
P. W. O’Toole
D. van Sinderen
J. Marchesi

January 2012

Background: The human gastrointestinal tract (GIT) represents one of the most densely populated micr...

Intestinal colonisation patterns in breastfed and formula-fed infants during the first 12 weeks of life reveal sequential microbiota signatures

Timmerman, Harro M.
Rutten, Nicole B.M.M.
Boekhorst, Jos
Saulnier, Delphine M.
Kortman, Guus A.M.
Contractor, Nikhat
Kullen, Martin
Floris, Esther
Harmsen, Hermie J.M.
Vlieger, Arine M.
Kleerebezem, Michiel
Rijkers, Ger T.

January 2017

The establishment of the infant gut microbiota is a highly dynamic process dependent on extrinsic an...

Microbiome of the first stool after birth and infantile colic

Kielenniva, K. (Katja)
Renko, M. (Marjo)
Paalanne, N. (Niko)
Vänni, P. (Petri)
Salo, J. (Jarmo)
Tejesvi, M. (Mysore)
Koivusaari, P. (Pirjo)
Pokka, T. (Tytti)
Kaukola, T. (Tuula)
Pirttilä, A. M. (Anna Maria)
Tapiainen, T. (Terhi)

January 2020

Abstract Background: Recent studies have shown a diverse microbiome in the first stool after birth....

Relative contribution of the phylum/order-like phylogroups to the microbiota of studied infants assessed by HITChip.

Laura Moles (428137)
Marta Gómez (5655427)
Hans Heilig (428138)
Gerardo Bustos (428139)
Susana Fuentes (428140)
Willem de Vos (3404711)
Leónides Fernández (428141)
Juan M. Rodríguez (428142)
Esther Jiménez (428143)

June 2013

<p>Phylum/order-like phylogroups detected in meconium and 3<sup>rd</sup> week fecal samples by HITCh...

Phylum-level distribution of bacteria in fecal samples of healthy young children and adults.

Tamar Ringel-Kulka (304256)
Jing Cheng (41407)
Yehuda Ringel (304258)
Jarkko Salojärvi (188364)
Ian Carroll (415150)
Airi Palva (183484)
Willem M. de Vos (183481)
Reetta Satokari (248875)

May 2013

<p>Phylum-level distribution of bacteria in fecal samples of healthy young children and adults.</p

(A) Relative abundances of phylum level distributions of the fecal microbiota in triplet set A.

Kiera Murphy (214473)
Carol Anne O’ Shea (723320)
C. Anthony Ryan (602555)
Eugene M. Dempsey (633023)
Paul W. O' Toole (723321)
Catherine Stanton (223943)
R. Paul Ross (152753)

April 2015

<p>(B)Relative abundances of genus level distributions of the fecal microbiota in triplet set A. The...

Composition at phylum level of the gut microbiota profiles of 31 infants enrolled in the study for 30 days following birth.

Federica Del Chierico (674626)
Pamela Vernocchi (791125)
Andrea Petrucca (528397)
Paola Paci (120534)
Susana Fuentes (428140)
Giulia Praticò (536570)
Giorgio Capuani (331189)
Andrea Masotti (791126)
Sofia Reddel (791127)
Alessandra Russo (791128)
Cristina Vallone (791129)
Guglielmo Salvatori (791130)
Elsa Buffone (791131)
Fabrizio Signore (791132)
Giuliano Rigon (791133)
Andrea Dotta (791134)
Alfredo Miccheli (536574)
Willem M. de Vos (183481)
Bruno Dallapiccola (294048)
Lorenza Putignani (674627)

September 2015

<p>At each time point, the gut microbiota was characterized by HITChip-based phylogeny.</p

Comparison of the microbiota communities of neonate meconium to adult stool samples.

Jianzhong Hu (230732)
Yoko Nomura (318252)
Ali Bashir (44572)
Heriberto Fernandez-Hernandez (480648)
Steven Itzkowitz (480649)
Zhiheng Pei (105673)
Joanne Stone (480650)
Holly Loudon (480651)
Inga Peter (113652)

November 2013

<p>A. Classification of the microbiota at the Phylum level. Samples BM62-BM140 are neonate meconium ...

Phyla in the microbiota of meconium and feces analyzed by HITChip and culture-based techniques.

Laura Moles (428137)
Marta Gómez (5655427)
Hans Heilig (428138)
Gerardo Bustos (428139)
Susana Fuentes (428140)
Willem de Vos (3404711)
Leónides Fernández (428141)
Juan M. Rodríguez (428142)
Esther Jiménez (428143)

June 2013

<p>The relative contribution of the phyla to the microbiota of meconium and 3<sup>rd</sup> week feca...

Longitudinal investigation of the faecal microbiota of healthy full-term infants using fluorescence in situ hybridization and denaturing gradient gel electrophoresis.

Roger, Laure C.
McCartney, Anne L.

November 2010

From birth onwards, the gastrointestinal (GI) tract of infants progressively acquires a complex rang...

The Influence of Different Maternal Microbial Communities on the Development of Infant Gut and Oral Microbiota

Drell, T
Stsepetova, J
Simm, Jaak
Rull, K
Aleksejeva, A
Antson, A
Tillmann, V
Metsis, M
Sepp, E
Salumets, A
Mandar, R

January 2017

Very few studies have analyzed how the composition of mother's microbiota affects the development of...

CRADs of the human infant gut microbiome.

Lena Takayasu (4339396)
Wataru Suda (395421)
Eiichiro Watanabe (2229964)
Shinji Fukuda (266164)
Kageyasu Takanashi (4339393)
Hiroshi Ohno (266170)
Misako Takayasu (602365)
Hideki Takayasu (602364)
Masahira Hattori (2579)

August 2017

<p>A: Clustering of the 13 human infant samples at the genus level. Hierarchal clustering is perform...

Composition of fecal microbiota at phylum (A), class (B), family (C, D), and OTUs (E) levels.

Xiaofei Xu (109890)
Xuewu Zhang (2310436)

January 2015

<p>Composition of fecal microbiota at phylum (A), class (B), family (C, D), and OTUs (E) levels. </p

Development of the human infant intestinal microbiota.

Chana Palmer
Elisabeth M Bik
Daniel B DiGiulio
David A Relman
Patrick O Brown

July 2007

Almost immediately after a human being is born, so too is a new microbial ecosystem, one that reside...

Bacterial microbiota composition in breast milk and the infant oral cavity.

Heidi Tuominen (353129)
Samuli Rautava (5932079)
Maria Carmen Collado (5932082)
Stina Syrjänen (75594)
Jaana Rautava (138616)

November 2018

The relative abundance of bacteria are presented on the phylum (Fig 1A) and family levels (Fig 1B) f...

Diversity of bifidobacteria within the infant gut microbiota

TURRONI, FRANCESCA
VENTURA, Marco
C. Peano
D. Pass
E. Foroni
M. Severgnini
M. Claesson
C. Kerr
J. Hourihane
D. Murray
F. Fuligni
M. Gueimonde
A. Margolles
G. De Bellis
P. W. O’Toole
D. van Sinderen
J. Marchesi

January 2012

Background: The human gastrointestinal tract (GIT) represents one of the most densely populated micr...

Intestinal colonisation patterns in breastfed and formula-fed infants during the first 12 weeks of life reveal sequential microbiota signatures

Timmerman, Harro M.
Rutten, Nicole B.M.M.
Boekhorst, Jos
Saulnier, Delphine M.
Kortman, Guus A.M.
Contractor, Nikhat
Kullen, Martin
Floris, Esther
Harmsen, Hermie J.M.
Vlieger, Arine M.
Kleerebezem, Michiel
Rijkers, Ger T.

January 2017

The establishment of the infant gut microbiota is a highly dynamic process dependent on extrinsic an...

Microbiome of the first stool after birth and infantile colic

Kielenniva, K. (Katja)
Renko, M. (Marjo)
Paalanne, N. (Niko)
Vänni, P. (Petri)
Salo, J. (Jarmo)
Tejesvi, M. (Mysore)
Koivusaari, P. (Pirjo)
Pokka, T. (Tytti)
Kaukola, T. (Tuula)
Pirttilä, A. M. (Anna Maria)
Tapiainen, T. (Terhi)

January 2020

Abstract Background: Recent studies have shown a diverse microbiome in the first stool after birth....

Relative contribution of the phylum/order-like phylogroups to the microbiota of studied infants assessed by HITChip.

Laura Moles (428137)
Marta Gómez (5655427)
Hans Heilig (428138)
Gerardo Bustos (428139)
Susana Fuentes (428140)
Willem de Vos (3404711)
Leónides Fernández (428141)
Juan M. Rodríguez (428142)
Esther Jiménez (428143)

June 2013

<p>Phylum/order-like phylogroups detected in meconium and 3<sup>rd</sup> week fecal samples by HITCh...

Phylum-level distribution of bacteria in fecal samples of healthy young children and adults.

Tamar Ringel-Kulka (304256)
Jing Cheng (41407)
Yehuda Ringel (304258)
Jarkko Salojärvi (188364)
Ian Carroll (415150)
Airi Palva (183484)
Willem M. de Vos (183481)
Reetta Satokari (248875)

May 2013

<p>Phylum-level distribution of bacteria in fecal samples of healthy young children and adults.</p

(A) Relative abundances of phylum level distributions of the fecal microbiota in triplet set A.

Kiera Murphy (214473)
Carol Anne O’ Shea (723320)
C. Anthony Ryan (602555)
Eugene M. Dempsey (633023)
Paul W. O' Toole (723321)
Catherine Stanton (223943)
R. Paul Ross (152753)

April 2015

<p>(B)Relative abundances of genus level distributions of the fecal microbiota in triplet set A. The...

Composition at phylum level of the gut microbiota profiles of 31 infants enrolled in the study for 30 days following birth.

Federica Del Chierico (674626)
Pamela Vernocchi (791125)
Andrea Petrucca (528397)
Paola Paci (120534)
Susana Fuentes (428140)
Giulia Praticò (536570)
Giorgio Capuani (331189)
Andrea Masotti (791126)
Sofia Reddel (791127)
Alessandra Russo (791128)
Cristina Vallone (791129)
Guglielmo Salvatori (791130)
Elsa Buffone (791131)
Fabrizio Signore (791132)
Giuliano Rigon (791133)
Andrea Dotta (791134)
Alfredo Miccheli (536574)
Willem M. de Vos (183481)
Bruno Dallapiccola (294048)
Lorenza Putignani (674627)

September 2015

<p>At each time point, the gut microbiota was characterized by HITChip-based phylogeny.</p

Comparison of the microbiota communities of neonate meconium to adult stool samples.

Jianzhong Hu (230732)
Yoko Nomura (318252)
Ali Bashir (44572)
Heriberto Fernandez-Hernandez (480648)
Steven Itzkowitz (480649)
Zhiheng Pei (105673)
Joanne Stone (480650)
Holly Loudon (480651)
Inga Peter (113652)

November 2013

<p>A. Classification of the microbiota at the Phylum level. Samples BM62-BM140 are neonate meconium ...

Phyla in the microbiota of meconium and feces analyzed by HITChip and culture-based techniques.

Laura Moles (428137)
Marta Gómez (5655427)
Hans Heilig (428138)
Gerardo Bustos (428139)
Susana Fuentes (428140)
Willem de Vos (3404711)
Leónides Fernández (428141)
Juan M. Rodríguez (428142)
Esther Jiménez (428143)

June 2013

<p>The relative contribution of the phyla to the microbiota of meconium and 3<sup>rd</sup> week feca...

Longitudinal investigation of the faecal microbiota of healthy full-term infants using fluorescence in situ hybridization and denaturing gradient gel electrophoresis.

Roger, Laure C.
McCartney, Anne L.

November 2010

From birth onwards, the gastrointestinal (GI) tract of infants progressively acquires a complex rang...

The Influence of Different Maternal Microbial Communities on the Development of Infant Gut and Oral Microbiota

Drell, T
Stsepetova, J
Simm, Jaak
Rull, K
Aleksejeva, A
Antson, A
Tillmann, V
Metsis, M
Sepp, E
Salumets, A
Mandar, R

January 2017

Very few studies have analyzed how the composition of mother's microbiota affects the development of...

CRADs of the human infant gut microbiome.

Lena Takayasu (4339396)
Wataru Suda (395421)
Eiichiro Watanabe (2229964)
Shinji Fukuda (266164)
Kageyasu Takanashi (4339393)
Hiroshi Ohno (266170)
Misako Takayasu (602365)
Hideki Takayasu (602364)
Masahira Hattori (2579)

August 2017

<p>A: Clustering of the 13 human infant samples at the genus level. Hierarchal clustering is perform...

Composition of fecal microbiota at phylum (A), class (B), family (C, D), and OTUs (E) levels.

Xiaofei Xu (109890)
Xuewu Zhang (2310436)

January 2015

<p>Composition of fecal microbiota at phylum (A), class (B), family (C, D), and OTUs (E) levels. </p

Development of the human infant intestinal microbiota.

Chana Palmer
Elisabeth M Bik
Daniel B DiGiulio
David A Relman
Patrick O Brown

July 2007

Almost immediately after a human being is born, so too is a new microbial ecosystem, one that reside...

Bacterial microbiota composition in breast milk and the infant oral cavity.

Heidi Tuominen (353129)
Samuli Rautava (5932079)
Maria Carmen Collado (5932082)
Stina Syrjänen (75594)
Jaana Rautava (138616)

November 2018

The relative abundance of bacteria are presented on the phylum (Fig 1A) and family levels (Fig 1B) f...

Diversity of bifidobacteria within the infant gut microbiota

TURRONI, FRANCESCA
VENTURA, Marco
C. Peano
D. Pass
E. Foroni
M. Severgnini
M. Claesson
C. Kerr
J. Hourihane
D. Murray
F. Fuligni
M. Gueimonde
A. Margolles
G. De Bellis
P. W. O’Toole
D. van Sinderen
J. Marchesi

January 2012

Background: The human gastrointestinal tract (GIT) represents one of the most densely populated micr...

Intestinal colonisation patterns in breastfed and formula-fed infants during the first 12 weeks of life reveal sequential microbiota signatures

Timmerman, Harro M.
Rutten, Nicole B.M.M.
Boekhorst, Jos
Saulnier, Delphine M.
Kortman, Guus A.M.
Contractor, Nikhat
Kullen, Martin
Floris, Esther
Harmsen, Hermie J.M.
Vlieger, Arine M.
Kleerebezem, Michiel
Rijkers, Ger T.

January 2017

The establishment of the infant gut microbiota is a highly dynamic process dependent on extrinsic an...

Microbiome of the first stool after birth and infantile colic

Kielenniva, K. (Katja)
Renko, M. (Marjo)
Paalanne, N. (Niko)
Vänni, P. (Petri)
Salo, J. (Jarmo)
Tejesvi, M. (Mysore)
Koivusaari, P. (Pirjo)
Pokka, T. (Tytti)
Kaukola, T. (Tuula)
Pirttilä, A. M. (Anna Maria)
Tapiainen, T. (Terhi)

January 2020

Abstract Background: Recent studies have shown a diverse microbiome in the first stool after birth....