Phylogenetic tree created from alignments of sequences obtained from gagL PCR.

Phylogenetic analysis based on nucleotide sequences of ORFV011.

Xuelin Chi (470953)
Xiancheng Zeng (470954)
Wenbo Hao (387710)
Ming Li (91180)
Wei Li (7081)
Xiaohong Huang (222480)
Shihua Wang (219946)
Shuhong Luo (387711)

October 2013

(A). Phylogenetic analysis based on nucleotide sequences of ORFV059 (B).The phylogenetic based on...

Phylogenetic tree showing the relationship of the twenty-eight retrieved bands from DGGE profile, on the basis of mglA gene fragment sequences obtained.

Baiyuan Li (639365)
Qing Yao (56578)
Honghui Zhu (296188)

October 2014

The numbers of the sequences in this tree (e.g., B1) refer to the numbers in the denaturing gradi...

Phylogenetic tree using the amino acid sequences of putative ODC from E. histolytica and ODCs from other organisms.

Anupam Jhingran (85253)
Prasad K. Padmanabhan (85254)
Sushma Singh (85255)
Krishanpal Anamika (85256)
Abhijeet A. Bakre (85257)
Sudha Bhattacharya (85258)
Alok Bhattacharya (56260)
Narayanaswamy Srinivasan (85259)
Rentala Madhubala (85260)

February 2013

The TreeView program in the ClustalW displayed the phyletic trees derived from the multiple align...

Phylogenetic tree created from alignments of sequences obtained from gagO/gagI PCR.

Li Ling Lee (163178)
Lin Lin (46073)
David S. Bell (163184)
Susan Levine (163189)
Maureen R. Hanson (8355)

May 2012

Phylogenetic tree was created with DNASTAR MegAlign Version 8.1.2. by ClustalW (weighted) method....

Tree topology.

Luciana Bueno Freitas (591256)
Zigui Chen (153298)
Elaine Freire Muqui (591257)
Neide Aparecida Tosato Boldrini (591258)
Angélica Espinosa Miranda (591259)
Liliana Cruz Spano (435449)
Robert D. Burk (35757)

July 2014

Phylogenetic tree was inferred from global alignment of complete and partial genome nucleotide se...

Sequence alignment for phylogenetic tree construction

Laetitia Wilkins (5375699)
Cassandra Ettinger (660919)
Guillaume Jospin (385738)
Jonathan Eisen (97599)

December 2018

This alignment was used to build a tree with our MAGs, all taxa previously identified by Burgess et ...

Phylogenetic trees based on complete A) early (T Antigen) and B) late (VP1, VP2 and VP3) transcripts.

Simon J. Anthony (241625)
Judy A. St. Leger (432359)
Isamara Navarrete-Macias (432360)
Erica Nilson (432361)
Maria Sanchez-Leon (432362)
Eliza Liang (432363)
Tracie Seimon (335622)
Komal Jain (432364)
William Karesh (432365)
Peter Daszak (72525)
Thomas Briese (67195)
W. Ian Lipkin (67196)

July 2013

Alignments were generated using Muscle (executed in Geneious V6.0.4), and Maximum Likelihood tree...

Phylogenetic analysis based on clock and cycle/Bmal sequences.

Mickael Perrigault (2811160)
Damien Tran (2811157)

January 2017

The tree was generated by Maximum Likelihood method using Mega 6 program and based on the multipl...

Phylogenetic tree based on alignments of LTRs from Ty elements of S. cerevisiae S288C.

Jérôme Maury (2550037)
Susanne M. Germann (2550019)
Simo Abdessamad Baallal Jacobsen (2550016)
Niels B. Jensen (2550034)
Kanchana R. Kildegaard (2550022)
Markus J. Herrgård (2550028)
Konstantin Schneider (2550031)
Anna Koza (2550025)
Jochen Forster (2550040)
Jens Nielsen (10549)
Irina Borodina (349329)

March 2016

LTRs longer than 200 nucleotides were retrieved and a multiple alignment was performed at <a href...

A phylogenetic tree of the aligned sequences was constructed using the neighbor-joining algorithm in MEGA (version 3

Eun-Mi Park (50899)
Jung-Ha Kang (50900)
Jung Soo Seo (50901)
GunDo Kim (50902)
Jongkyeong Chung (50903)
Tae-Jin Choi (50904)

December 2011

0). The confidence for each node was determined by bootstrap analysis (1000 repetitions).Copyr...

Phylogenetic tree based on aligned sequences of the rickettsial ompA gene and constructed by using the Neighbor-Joining method in MEGA5.1 software.

Ömer Orkun (610757)
Zafer Karaer (610758)
Ayşe Çakmak (610759)
Serpil Nalbantoğlu (610760)

August 2014

The rickettsial sequences obtained in this study are shown in a bold font. GenBank accession numb...

Figure S3

Barylski, Jakub
Enault, François
Dutilh, Bas
Schuller, Margo
Edwards, Rob
Gillis, Annika
Klumpp, Jochen
Knezevic, Petar
Krupovic, Mart
Kuhn, Jens
Lavigne, Rob
Oksanen, Hanna
Sullivan, Matthew
Jang, Ho Bin
Simmonds, Peter
Aiewsakun, Pakorn
Wittmann, Johannes
Tolstoy, Igor
Brister, James
Kropinski, Andrew
Adriaenssens, Evelien

May 2019

Maximum Likelihood single marker gene phylogenetic trees. Multiple alignments of amino acid sequence...

Phylogenetic analysis TS genes.

Thaddeus T. Gbem (493598)
Mario Waespy (493599)
Bettina Hesse (493600)
Frank Dietz (72284)
Joel Smith (493601)
Gloria D. Chechet (493602)
Jonathan A. Nok (493603)
Sørge Kelm (72288)

December 2013

Phylogenetic analyses of DNA sequences were performed as described under <a href="http://www.plos...

Phylogenetic tree of the five sequenced P. fluorescens isolates and the phylogenetic tree of fliC genes.

Kai Feng (502124)
Ronggui Li (815372)
Yingnan Chen (396810)
Boguang Zhao (447707)
Tongming Yin (236819)

October 2015

(a) the phylogenetic tree was generated based on the multiple alignments of amino acid sequences ...

Phylogenetic trees based on whole genome sequences.

Yun Fong Ngeow (62803)
Yan Ling Wong (716013)
Joon Liang Tan (716014)
Kar Wai Hong (716015)
Hien Fuh Ng (716016)
Bee Lee Ong (716017)
Kok Gan Chan (309442)

April 2015

A) constructed with genomic orthologous genes; B) constructed with genome-wide SNPs.</p

Phylogenetic analysis based on nucleotide sequences of ORFV011.

Xuelin Chi (470953)
Xiancheng Zeng (470954)
Wenbo Hao (387710)
Ming Li (91180)
Wei Li (7081)
Xiaohong Huang (222480)
Shihua Wang (219946)
Shuhong Luo (387711)

October 2013

(A). Phylogenetic analysis based on nucleotide sequences of ORFV059 (B).The phylogenetic based on...

Phylogenetic tree showing the relationship of the twenty-eight retrieved bands from DGGE profile, on the basis of mglA gene fragment sequences obtained.

Baiyuan Li (639365)
Qing Yao (56578)
Honghui Zhu (296188)

October 2014

The numbers of the sequences in this tree (e.g., B1) refer to the numbers in the denaturing gradi...

Phylogenetic tree using the amino acid sequences of putative ODC from E. histolytica and ODCs from other organisms.

Anupam Jhingran (85253)
Prasad K. Padmanabhan (85254)
Sushma Singh (85255)
Krishanpal Anamika (85256)
Abhijeet A. Bakre (85257)
Sudha Bhattacharya (85258)
Alok Bhattacharya (56260)
Narayanaswamy Srinivasan (85259)
Rentala Madhubala (85260)

February 2013

The TreeView program in the ClustalW displayed the phyletic trees derived from the multiple align...

Phylogenetic tree created from alignments of sequences obtained from gagO/gagI PCR.

Li Ling Lee (163178)
Lin Lin (46073)
David S. Bell (163184)
Susan Levine (163189)
Maureen R. Hanson (8355)

May 2012

Phylogenetic tree was created with DNASTAR MegAlign Version 8.1.2. by ClustalW (weighted) method....

Tree topology.

Luciana Bueno Freitas (591256)
Zigui Chen (153298)
Elaine Freire Muqui (591257)
Neide Aparecida Tosato Boldrini (591258)
Angélica Espinosa Miranda (591259)
Liliana Cruz Spano (435449)
Robert D. Burk (35757)

July 2014

Phylogenetic tree was inferred from global alignment of complete and partial genome nucleotide se...

Sequence alignment for phylogenetic tree construction

Laetitia Wilkins (5375699)
Cassandra Ettinger (660919)
Guillaume Jospin (385738)
Jonathan Eisen (97599)

December 2018

This alignment was used to build a tree with our MAGs, all taxa previously identified by Burgess et ...

Phylogenetic trees based on complete A) early (T Antigen) and B) late (VP1, VP2 and VP3) transcripts.

Simon J. Anthony (241625)
Judy A. St. Leger (432359)
Isamara Navarrete-Macias (432360)
Erica Nilson (432361)
Maria Sanchez-Leon (432362)
Eliza Liang (432363)
Tracie Seimon (335622)
Komal Jain (432364)
William Karesh (432365)
Peter Daszak (72525)
Thomas Briese (67195)
W. Ian Lipkin (67196)

July 2013

Alignments were generated using Muscle (executed in Geneious V6.0.4), and Maximum Likelihood tree...

Phylogenetic analysis based on clock and cycle/Bmal sequences.

Mickael Perrigault (2811160)
Damien Tran (2811157)

January 2017

The tree was generated by Maximum Likelihood method using Mega 6 program and based on the multipl...

Phylogenetic tree based on alignments of LTRs from Ty elements of S. cerevisiae S288C.

Jérôme Maury (2550037)
Susanne M. Germann (2550019)
Simo Abdessamad Baallal Jacobsen (2550016)
Niels B. Jensen (2550034)
Kanchana R. Kildegaard (2550022)
Markus J. Herrgård (2550028)
Konstantin Schneider (2550031)
Anna Koza (2550025)
Jochen Forster (2550040)
Jens Nielsen (10549)
Irina Borodina (349329)

March 2016

LTRs longer than 200 nucleotides were retrieved and a multiple alignment was performed at <a href...

A phylogenetic tree of the aligned sequences was constructed using the neighbor-joining algorithm in MEGA (version 3

Eun-Mi Park (50899)
Jung-Ha Kang (50900)
Jung Soo Seo (50901)
GunDo Kim (50902)
Jongkyeong Chung (50903)
Tae-Jin Choi (50904)

December 2011

0). The confidence for each node was determined by bootstrap analysis (1000 repetitions).Copyr...

Phylogenetic tree based on aligned sequences of the rickettsial ompA gene and constructed by using the Neighbor-Joining method in MEGA5.1 software.

Ömer Orkun (610757)
Zafer Karaer (610758)
Ayşe Çakmak (610759)
Serpil Nalbantoğlu (610760)

August 2014

The rickettsial sequences obtained in this study are shown in a bold font. GenBank accession numb...

Figure S3

Barylski, Jakub
Enault, François
Dutilh, Bas
Schuller, Margo
Edwards, Rob
Gillis, Annika
Klumpp, Jochen
Knezevic, Petar
Krupovic, Mart
Kuhn, Jens
Lavigne, Rob
Oksanen, Hanna
Sullivan, Matthew
Jang, Ho Bin
Simmonds, Peter
Aiewsakun, Pakorn
Wittmann, Johannes
Tolstoy, Igor
Brister, James
Kropinski, Andrew
Adriaenssens, Evelien

May 2019

Maximum Likelihood single marker gene phylogenetic trees. Multiple alignments of amino acid sequence...

Phylogenetic analysis TS genes.

Thaddeus T. Gbem (493598)
Mario Waespy (493599)
Bettina Hesse (493600)
Frank Dietz (72284)
Joel Smith (493601)
Gloria D. Chechet (493602)
Jonathan A. Nok (493603)
Sørge Kelm (72288)

December 2013

Phylogenetic analyses of DNA sequences were performed as described under <a href="http://www.plos...

Phylogenetic tree of the five sequenced P. fluorescens isolates and the phylogenetic tree of fliC genes.

Kai Feng (502124)
Ronggui Li (815372)
Yingnan Chen (396810)
Boguang Zhao (447707)
Tongming Yin (236819)

October 2015

(a) the phylogenetic tree was generated based on the multiple alignments of amino acid sequences ...

Phylogenetic trees based on whole genome sequences.

Yun Fong Ngeow (62803)
Yan Ling Wong (716013)
Joon Liang Tan (716014)
Kar Wai Hong (716015)
Hien Fuh Ng (716016)
Bee Lee Ong (716017)
Kok Gan Chan (309442)

April 2015

A) constructed with genomic orthologous genes; B) constructed with genome-wide SNPs.</p

Phylogenetic analysis based on nucleotide sequences of ORFV011.

Xuelin Chi (470953)
Xiancheng Zeng (470954)
Wenbo Hao (387710)
Ming Li (91180)
Wei Li (7081)
Xiaohong Huang (222480)
Shihua Wang (219946)
Shuhong Luo (387711)

October 2013

(A). Phylogenetic analysis based on nucleotide sequences of ORFV059 (B).The phylogenetic based on...

Phylogenetic tree showing the relationship of the twenty-eight retrieved bands from DGGE profile, on the basis of mglA gene fragment sequences obtained.

Baiyuan Li (639365)
Qing Yao (56578)
Honghui Zhu (296188)

October 2014

The numbers of the sequences in this tree (e.g., B1) refer to the numbers in the denaturing gradi...

Phylogenetic tree using the amino acid sequences of putative ODC from E. histolytica and ODCs from other organisms.

Anupam Jhingran (85253)
Prasad K. Padmanabhan (85254)
Sushma Singh (85255)
Krishanpal Anamika (85256)
Abhijeet A. Bakre (85257)
Sudha Bhattacharya (85258)
Alok Bhattacharya (56260)
Narayanaswamy Srinivasan (85259)
Rentala Madhubala (85260)

February 2013

The TreeView program in the ClustalW displayed the phyletic trees derived from the multiple align...

Phylogenetic tree created from alignments of sequences obtained from gagL PCR.

Abstract

Extracted data

Phylogenetic tree created from alignments of sequences obtained from gagL PCR.

Abstract

Extracted data

Related items

Related items