<p>Dependence of Rb model variability on the integration time step used in the simulation. Threshold (<b>A</b>) and σ (<b>B</b>) values calculated as in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0036670#pone-0036670-g003" target="_blank">Figure 3A</a>, obtained at different values of integration time step (dt). N = 1000. <b>C.</b> Dependence of computation time on integration time step (dt) with N = 1000 channels. <b>D.</b> Dependence of computation time on number of channels (N) with dt = 0.5 µs. Computation time is the time, in seconds, needed to perform the 16000 simulations necessary for a single firing efficiency curve (1000 pulses at 16 current levels). This figure corresponds to simulations performed in th...
We ran the runserosim function 100 times and report the mean run times under various simulation sett...
Michela TauferThe advent of general purpose graphics processing units (GPGPU???s) brings about a wh...
<p>(A) Relative integration time of the active Na (upward triangles), two-compartment active IF (dow...
<p>15 voltage traces (bottom) resulting from independent simulations with the Rb model, in which a 5...
<p>Fitting of a firing efficiency curve to a sigmoid function (see Methods) that is characterized by...
<p>(<b>A</b>) Scaling of wall time duration (normalized by the duration on a single CPU core) with t...
<p>For our applications with different numbers # rs of representative sinusoids, the table lists the...
<p>Computational time overhead, as given by (34), required to solve the full CME (diamonds) and to p...
<p>Computational times, in seconds (rounded unless less than 1 second), for the four methods of the ...
<p>The computation times (unit in second) averaging over scenarios having with the same numbers of c...
<p>The model runs using a forward-integration routine to calculate each model step (1–6) at each tim...
<p>Comparison between the computational time taken by cuTauLeaping and COPASI CPU tau-leaping to exe...
<p>(A) is the transient simulation of gene regulator networks composed of variable number of genes. ...
The Memory Wall continues to be a problem with modern systems design. While the steady increase in p...
In this thesis, we present and analyze three algorithms that are designed to make computer simulatio...
We ran the runserosim function 100 times and report the mean run times under various simulation sett...
Michela TauferThe advent of general purpose graphics processing units (GPGPU???s) brings about a wh...
<p>(A) Relative integration time of the active Na (upward triangles), two-compartment active IF (dow...
<p>15 voltage traces (bottom) resulting from independent simulations with the Rb model, in which a 5...
<p>Fitting of a firing efficiency curve to a sigmoid function (see Methods) that is characterized by...
<p>(<b>A</b>) Scaling of wall time duration (normalized by the duration on a single CPU core) with t...
<p>For our applications with different numbers # rs of representative sinusoids, the table lists the...
<p>Computational time overhead, as given by (34), required to solve the full CME (diamonds) and to p...
<p>Computational times, in seconds (rounded unless less than 1 second), for the four methods of the ...
<p>The computation times (unit in second) averaging over scenarios having with the same numbers of c...
<p>The model runs using a forward-integration routine to calculate each model step (1–6) at each tim...
<p>Comparison between the computational time taken by cuTauLeaping and COPASI CPU tau-leaping to exe...
<p>(A) is the transient simulation of gene regulator networks composed of variable number of genes. ...
The Memory Wall continues to be a problem with modern systems design. While the steady increase in p...
In this thesis, we present and analyze three algorithms that are designed to make computer simulatio...
We ran the runserosim function 100 times and report the mean run times under various simulation sett...
Michela TauferThe advent of general purpose graphics processing units (GPGPU???s) brings about a wh...
<p>(A) Relative integration time of the active Na (upward triangles), two-compartment active IF (dow...