List of nucleotide polymorphisms in <i>Lhcb1</i> with their effects on codons, frequencies.

a<p>The first letter indicates the common bp at this site, followed by the position of the SNP in the sequence on GenBank accession number AK359563.1, and then the nucleotide which is the rare variant at this site.</p>b<p>All nucleotide changes identified by sequencing were first by EcoTILLING as a band on the gel image. In two sample, ∼242 bp and ∼532 bp were identified on the EcoTILLING gel for which corresponding polymorphisms could not be confirmed by sequencing.</p>c<p>Frequency was calculated by dividing the number of similar nucleotide changes identified on the EcoTILLING gel by the number of samples analyzed.</p>d<p>The first letter indicates the common amino acid at this site, followed by the position of the SNP within the predicted protein sequence and then the amino acid change induced by the variant nucleotide polymorphism. “ = ” means no change in the amino acid encoded by that codon (synonymous variation).</p>e<p>A non-synonymous SNP is predicted to be damaging to the encoded protein if the PARSESNP score is >10 (bold).</p>f<p>A non-synonymous SNP is predicted to be damaging to the encoded protein if the SIFT score is <0.05 (bold).</p>*<p>Adjacent polymorphisms appear as a single band on the gel image.