<p>(A) E.coli, Exact error model (Exact), and 36 bp reads (36 bp), (B) E.coli, Illumina error model (Illumina), and 36 bp, (C) E.coli, Exact, and 75 bp reads (75 bp), (D) E.coli Illumina, and 75 bp, (E) S.cerevisiae, Illumina, and 75 bp, (F) L.major, Illumina, and 75 bp, and (G) C.elegans, Illumina, and 75 bp. The k-mer values were varied from 19 to 35 on 36 bp data and from 37 to 73 on 76 bp data. In most datasets, NG50 values increased then decreased as we increased the k-mer values. The NG50 values were mostly saturated on the sequence coverage of 80x. The longer the genome size of an organism, the lower its NG50 values were.</p
<p>(A) Simulated metagenomes (50–500 bp; 1% error rate; mock community 160319967-stool1) were search...
<p>The sequenced bacteria are: <i>Staphylococcus aureus</i> (dark blue line, 32.8% GC), <i>Streptoco...
<p>Black and white figure of the genomes from the Gold Database at the Joint Genome Institute. This ...
<p>(A) E.coli, (B) S.cerevisiae, (C) L.major, and (D) C.elegans. The k-mer values were varied from 1...
<p>(A) 20x, (B) 40x, (C) 80x, and (D) 160x. Illumina error model and 75 bp reads were used. Note tha...
(A) Values of NG(X) for C. Microthrix data set. (B) Genome coverage and misassemblies for C. Microth...
<p><b>A</b>) N50 for assembled <i>E.coli</i> genome: N50 is the length of the smallest contig which ...
The Illumina sequencing data associated with the study: "Population size mediates the contribution o...
<p>Reads were mapped to <i>E. coli</i> O157:H7 EDL933 and binned into 1000 bp bins. (A) The average ...
<p><sup>a</sup>For <i>K</i>. <i>oxytoca</i>, only the largest contig was used, representing approxim...
<p>We show the corrected N50 length in eight assemblies of three bacterial genomes: <i>E. coli</i> (...
<p>(A) The distribution of CLOGs as a function of the number of assigned strains. (B) The size of th...
<p><b>(a)</b> Stacked bar charts showing the relative abundance of bacterial families obtained by se...
Next-generation sequencing (NGS) is commonly used in metagenomic studies of complex microbial commun...
<p>The MC was sequenced by different centers on both 3730 and 454 platforms. Each sequencing trial i...
<p>(A) Simulated metagenomes (50–500 bp; 1% error rate; mock community 160319967-stool1) were search...
<p>The sequenced bacteria are: <i>Staphylococcus aureus</i> (dark blue line, 32.8% GC), <i>Streptoco...
<p>Black and white figure of the genomes from the Gold Database at the Joint Genome Institute. This ...
<p>(A) E.coli, (B) S.cerevisiae, (C) L.major, and (D) C.elegans. The k-mer values were varied from 1...
<p>(A) 20x, (B) 40x, (C) 80x, and (D) 160x. Illumina error model and 75 bp reads were used. Note tha...
(A) Values of NG(X) for C. Microthrix data set. (B) Genome coverage and misassemblies for C. Microth...
<p><b>A</b>) N50 for assembled <i>E.coli</i> genome: N50 is the length of the smallest contig which ...
The Illumina sequencing data associated with the study: "Population size mediates the contribution o...
<p>Reads were mapped to <i>E. coli</i> O157:H7 EDL933 and binned into 1000 bp bins. (A) The average ...
<p><sup>a</sup>For <i>K</i>. <i>oxytoca</i>, only the largest contig was used, representing approxim...
<p>We show the corrected N50 length in eight assemblies of three bacterial genomes: <i>E. coli</i> (...
<p>(A) The distribution of CLOGs as a function of the number of assigned strains. (B) The size of th...
<p><b>(a)</b> Stacked bar charts showing the relative abundance of bacterial families obtained by se...
Next-generation sequencing (NGS) is commonly used in metagenomic studies of complex microbial commun...
<p>The MC was sequenced by different centers on both 3730 and 454 platforms. Each sequencing trial i...
<p>(A) Simulated metagenomes (50–500 bp; 1% error rate; mock community 160319967-stool1) were search...
<p>The sequenced bacteria are: <i>Staphylococcus aureus</i> (dark blue line, 32.8% GC), <i>Streptoco...
<p>Black and white figure of the genomes from the Gold Database at the Joint Genome Institute. This ...