†<p>Significance analysis of microarrays (SAM) of IPF samples when categorized by percent predicted D<sub>L</sub>CO ≤35% [N = 15]. Differentially- expressed transcripts with <1% false discovery rate and ≥ 2-fold change in expression are represented. Fold changes are expressed as log<sub>2</sub> ratio. See supplementary tables for a complete list of differentially-expressed genes and corresponding accession numbers.</p
<p>The selection criteria to define a transcript as differentially regulated (indicated in bold) wer...
<p>The selection criteria to define a transcript as differentially regulated (indicated in bold) wer...
<p><sup>a</sup> Weighted to account for effect of the different sample sizes between each transcript...
‡<p>Significance analysis of microarrays (SAM) of IPF samples when categorized by percent predicted ...
Small sample size and high dimensionality of microarray data impose challenges on detecting differen...
Figure S5. The advanced IPF gene set could differentiate end-stage IPF but not AEIPF from usual IPF....
<p>(A and B) Venn diagrams representing the number of differentially expressed genes identified afte...
<p>(a) Schematic of hypothesis testing approach to identify genes with invariant expression (IE) fro...
<p>Note:</p>*<p><i>P</i><0.05, significance;</p>**<p><i>P</i><0.01, extreme significance.</p
<p>Top 65 up regulated and top 65 down regulated significant expressed genes extracted from SAM base...
<p><b>(a)</b> Volcano plot of the 12,629 genes detected in the microarray assays. The dashed line ma...
<p>(A) Differential expression <i>vs</i>. Differential splicing plot. The panel is partitioned into ...
<p>Number of significant differentially expressed genes within each comparative microarray group (fi...
<p>Panel A. Number of DEGs observed with change ≥2-fold at p≤0.005 by DESeq, microarray and Cuffdiff...
<p>Top genes that decrease (- log2) or increase (+ log2) in ZNF804A KD cells. TPM (transcripts per m...
<p>The selection criteria to define a transcript as differentially regulated (indicated in bold) wer...
<p>The selection criteria to define a transcript as differentially regulated (indicated in bold) wer...
<p><sup>a</sup> Weighted to account for effect of the different sample sizes between each transcript...
‡<p>Significance analysis of microarrays (SAM) of IPF samples when categorized by percent predicted ...
Small sample size and high dimensionality of microarray data impose challenges on detecting differen...
Figure S5. The advanced IPF gene set could differentiate end-stage IPF but not AEIPF from usual IPF....
<p>(A and B) Venn diagrams representing the number of differentially expressed genes identified afte...
<p>(a) Schematic of hypothesis testing approach to identify genes with invariant expression (IE) fro...
<p>Note:</p>*<p><i>P</i><0.05, significance;</p>**<p><i>P</i><0.01, extreme significance.</p
<p>Top 65 up regulated and top 65 down regulated significant expressed genes extracted from SAM base...
<p><b>(a)</b> Volcano plot of the 12,629 genes detected in the microarray assays. The dashed line ma...
<p>(A) Differential expression <i>vs</i>. Differential splicing plot. The panel is partitioned into ...
<p>Number of significant differentially expressed genes within each comparative microarray group (fi...
<p>Panel A. Number of DEGs observed with change ≥2-fold at p≤0.005 by DESeq, microarray and Cuffdiff...
<p>Top genes that decrease (- log2) or increase (+ log2) in ZNF804A KD cells. TPM (transcripts per m...
<p>The selection criteria to define a transcript as differentially regulated (indicated in bold) wer...
<p>The selection criteria to define a transcript as differentially regulated (indicated in bold) wer...
<p><sup>a</sup> Weighted to account for effect of the different sample sizes between each transcript...