Comparison of network features.

<p>Modularity , diameter , fraction of nodes in the largest component , global clustering coefficient , and is the average degree of proteins the largest component. ‘Data’ is the empirical data, ‘DUNE’ is the model described here, ‘Vázquez’ is the duplication-only model of <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0039052#pone.0039052-Vzquez1" target="_blank">[29]</a>, ‘Berg’ is the link dynamics model <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0039052#pone.0039052-Berg1" target="_blank">[85]</a>, ‘RG’ is random geometric <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0039052#pone.0039052-Prulj1" target="_blank">[89]</a>, ‘MpK’ is the physical desolvation model presented in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0039052#pone.0039052-Deeds1" target="_blank">[52]</a>, and ‘ER’ is an Erdös-Rényi random graph <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0039052#pone.0039052-Erds1" target="_blank">[90]</a>. Simulated values are the median ( standard deviation) over 50 simulations. (See SI for details of each model’s setup and optimization.).