Consensus tree for the cytochrome b dataset for representative genotyped specimens of the <i>Rhinolophus hildebrandtii</i> complex.

<p>The topology represents the consensus topology from a 20 million MCMC run implemented in BEAST. Estimates of divergence times (million years ago; Mya) are indicated adjacent to nodes or above branches and grey bars indicate 95% HPD values. The split between the Hipposideridae and Rhinolophidae was used as the calibration point. Taxa names include museum/field numbers which correspond to <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0041744#pone.0041744.s003" target="_blank">Appendix S1</a> or GenBank accession numbers and abbreviations are: RcfH - <i>R. cf. hildebrandtii</i>, RD - <i>R. darlingi</i>, RE - <i>R. eloquens</i>, RF - <i>R. fumigatus</i>, RH - <i>R. hildebrandtii</i> s.l., RL - <i>R. landeri</i> and RR - <i>R. ruwenzorii</i>. Localities, where available, are provided, abbreviations include SA - South Africa, MZ - Mozambique, and ZW - Zimbabwe, and the numbers in parentheses correspond with place names in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0041744#pone.0041744.s001" target="_blank">Table S1</a> and <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0041744#pone-0041744-g002" target="_blank">Fig. 2</a> for Clade 1 and 2 individuals.