Relative abundance of strains within a taxon that contain at least one cheR-TPR gene.

Using Genomics to Decipher the Enigmatic Properties and Survival Adaptation of Candidate Phyla Radiation

Maatouk, Mohamad
Rolain, Jean-Marc
Bittar, Fadi

May 2023

International audienceMicrobial ecology is a critical field for understanding the composition, diver...

Comparative analysis of genome sequences covering the seven cronobacter species.

Susan Joseph
Prerak Desai
Yongmei Ji
Craig A Cummings
Rita Shih
Lovorka Degoricija
Alain Rico
Pius Brzoska
Stephen E Hamby
Naqash Masood
Sumyya Hariri
Hana Sonbol
Nadia Chuzhanova
Michael McClelland
Manohar R Furtado
Stephen J Forsythe

Species of Cronobacter are widespread in the environment and are occasional food-borne pathogens ass...

The microbial differences associated with disease and risk variants.

Bahtiyar Yilmaz (5474447)
Marianne R. Spalinger (450521)
Luc Biedermann (139959)
Yannick Franc (5474453)
Nicolas Fournier (2842580)
Jean-Benoit Rossel (3145257)
Pascal Juillerat (5474450)
Gerhard Rogler (139954)
Andrew J. Macpherson (169088)
Michael Scharl (139957)

July 2018

The relative abundance of significantly different taxa (q<0.05) were plotted for PTPN2 variant in...

Genetically diverse colonies are host to more active, potentially probiotic genera and fewer potentially pathogenic genera.

Heather R. Mattila (178798)
Daniela Rios (178804)
Victoria E. Walker-Sperling (178810)
Guus Roeselers (178815)
Irene L. G. Newton (178821)

March 2012

Number of sequences in bee guts sampled from genetically uniform and genetically diverse colonies...

Bacterial genera with potentially TCS tolerant pathogenic organisms were present in TCS contaminated environments.

Raees Khan (2938302)
Nazish Roy (4840080)
Kihyuck Choi (4840083)
Seon-Woo Lee (641127)

February 2018

(A) Percent relative abundance of candidate genera from AS and ICS with potentially pathog...

Classification of strains according to the number of cheR-TPR genes per genome.

Francisco Muñoz-Martínez (133778)
Cristina García-Fontana (133781)
Miriam Rico-Jiménez (133785)
Carlos Alfonso (133787)
Tino Krell (54128)

September 2012

Classification of strains according to the number of cheR-TPR genes per genome.</p

Occurrence and abundance of potential pathogens at genus and species levels revealed by 454 pyrosequencing of 16S rRNA gene amplicons.

Xin Lu (24821)
Xu-Xiang Zhang (201789)
Zhu Wang (73828)
Kailong Huang (465111)
Yuan Wang (14955)
Weigang Liang (734333)
Yunfei Tan (734334)
Bo Liu (127343)
Junying Tang (734335)

May 2015

(A) Relative abundance of potential pathogens at genus level. The effective pyrosequencing reads ...

Distribution of 71cR orthologs among sequenced fungal species.

Aydin Beseli (814488)
Roslyn Noar (814489)
Margaret E. Daub (814490)

October 2015

For each genome sequence available in the JGI MycoCosm portal, tblastn was used to search the fil...

Accurate genome relative abundance estimation for closely related species in a metagenomic sample

Sohn, Michael
An, Lingling
Pookhao, Naruekamol
Li, Qike

January 2014

BACKGROUND:Metagenomics has a great potential to discover previously unattainable information about ...

Phylogenetic tree of the 73 cyanobacterial genome groups based on clustering of their phylogenetic profiles.

Gopi Siva Sai Tiruveedula (4096921)
Pramod P. Wangikar (251601)

June 2017

Profiles of 8280 semi-conserved genes were used while clustering the organisms. List of the cyano...

RESEARCH ARTICLE Open Access Intraclonal genome diversity of Pseudomonas aeruginosa clones CHA and TB

Oliver Ki Bezuidt
Jens Klockgether
Sylvie Elsen
Ina Attree
Colin F Davenport
Burkhard Tümmler

August 2015

Background: Adaptation of Pseudomonas aeruginosa to different living conditions is accompanied by mi...

Comparison of the global phylogenomic characteristics of the commensal and BSI collections.

Judit Burgaya (16734180)
Julie Marin (4793637)
Guilhem Royer (5212526)
Bénédicte Condamine (10752838)
Benoit Gachet (15448719)
Olivier Clermont (240697)
Françoise Jaureguy (16734183)
Charles Burdet (3440975)
Agnès Lefort (9666464)
Victoire de Lastours (5853464)
Erick Denamur (22049)
Marco Galardini (124666)
François Blanquart (3191950)

August 2023

(A) Pangenome sizes as a function of the number of genomes analyzed for the BSI (912 strains) and co...

Number of retrieved CTL genes in eukaryotes.

Domingo Jiménez-López (3582083)
Laura Aguilar-Henonin (208580)
Juan Manuel González-Prieto (4760250)
Victor Aguilar-Hernández (208578)
Plinio Guzmán (208584)

January 2018

The phylogenetic relationship between forty-one viridiplantae (six green algae and thirty-five em...

Data from: Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus

Biller, Steven J.
Berube, Paul M.
Berta-Thompson, Jessie W.
Kelly, Libusha
Roggensack, Sara E.
Awad, Lana
Roache-Johnson, Kathryn H.
Ding, Huiming
Giovannoni, Stephen J.
Moore, Lisa R.
Chisholm, Sallie W.

September 2014

The marine cyanobacterium Prochlorococcus is the numerically dominant photosynthetic organism in the...

Comparative genomics of plant-associated pseudomonas spp. : insights into diversity and inheritance of traits involved in multitrophic interactions

Loper, Joyce E
Hassan, Karl A
Henkels, Marcella D
Tetu, Sasha G
Rangel, Lorena I
Kidarsa, Teresa A
Wilson, Neil L
van de Mortel, Judith E
Song, Chunxu
Blumhagen, Rachel
Radune, Diana
Hostetler, Jessica B
Mavrodi, Dmitri V
Brinkac, Larren M
Durkin, A. Scott
Kluepfel, Daniel A
Wechter, W. Patrick
Anderson, Anne J
Kim, Young Cheol
Pierson III, Leland S
Pierson, Elizabeth A
Lindow, Steven E
Kobayashi, Donald Y
Davis II, Edward W
Raaijmakers, Jos M
Weller, David M
Thomashow, Linda S
Allen, Andrew E
Paulsen, Ian T
Lim, Chee Kent
Shaffer, Brenda T
Elbourne, Liam D. H
Stockwell, Virginia O
Hartney, Sierra L
Breakwell, Katy

January 2012

We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens grou...

Using Genomics to Decipher the Enigmatic Properties and Survival Adaptation of Candidate Phyla Radiation

Maatouk, Mohamad
Rolain, Jean-Marc
Bittar, Fadi

May 2023

International audienceMicrobial ecology is a critical field for understanding the composition, diver...

Comparative analysis of genome sequences covering the seven cronobacter species.

Susan Joseph
Prerak Desai
Yongmei Ji
Craig A Cummings
Rita Shih
Lovorka Degoricija
Alain Rico
Pius Brzoska
Stephen E Hamby
Naqash Masood
Sumyya Hariri
Hana Sonbol
Nadia Chuzhanova
Michael McClelland
Manohar R Furtado
Stephen J Forsythe

Species of Cronobacter are widespread in the environment and are occasional food-borne pathogens ass...

The microbial differences associated with disease and risk variants.

Bahtiyar Yilmaz (5474447)
Marianne R. Spalinger (450521)
Luc Biedermann (139959)
Yannick Franc (5474453)
Nicolas Fournier (2842580)
Jean-Benoit Rossel (3145257)
Pascal Juillerat (5474450)
Gerhard Rogler (139954)
Andrew J. Macpherson (169088)
Michael Scharl (139957)

July 2018

The relative abundance of significantly different taxa (q<0.05) were plotted for PTPN2 variant in...

Genetically diverse colonies are host to more active, potentially probiotic genera and fewer potentially pathogenic genera.

Heather R. Mattila (178798)
Daniela Rios (178804)
Victoria E. Walker-Sperling (178810)
Guus Roeselers (178815)
Irene L. G. Newton (178821)

March 2012

Number of sequences in bee guts sampled from genetically uniform and genetically diverse colonies...

Bacterial genera with potentially TCS tolerant pathogenic organisms were present in TCS contaminated environments.

Raees Khan (2938302)
Nazish Roy (4840080)
Kihyuck Choi (4840083)
Seon-Woo Lee (641127)

February 2018

(A) Percent relative abundance of candidate genera from AS and ICS with potentially pathog...

Classification of strains according to the number of cheR-TPR genes per genome.

Francisco Muñoz-Martínez (133778)
Cristina García-Fontana (133781)
Miriam Rico-Jiménez (133785)
Carlos Alfonso (133787)
Tino Krell (54128)

September 2012

Classification of strains according to the number of cheR-TPR genes per genome.</p

Occurrence and abundance of potential pathogens at genus and species levels revealed by 454 pyrosequencing of 16S rRNA gene amplicons.

Xin Lu (24821)
Xu-Xiang Zhang (201789)
Zhu Wang (73828)
Kailong Huang (465111)
Yuan Wang (14955)
Weigang Liang (734333)
Yunfei Tan (734334)
Bo Liu (127343)
Junying Tang (734335)

May 2015

(A) Relative abundance of potential pathogens at genus level. The effective pyrosequencing reads ...

Distribution of 71cR orthologs among sequenced fungal species.

Aydin Beseli (814488)
Roslyn Noar (814489)
Margaret E. Daub (814490)

October 2015

For each genome sequence available in the JGI MycoCosm portal, tblastn was used to search the fil...

Accurate genome relative abundance estimation for closely related species in a metagenomic sample

Sohn, Michael
An, Lingling
Pookhao, Naruekamol
Li, Qike

January 2014

BACKGROUND:Metagenomics has a great potential to discover previously unattainable information about ...

Phylogenetic tree of the 73 cyanobacterial genome groups based on clustering of their phylogenetic profiles.

Gopi Siva Sai Tiruveedula (4096921)
Pramod P. Wangikar (251601)

June 2017

Profiles of 8280 semi-conserved genes were used while clustering the organisms. List of the cyano...

RESEARCH ARTICLE Open Access Intraclonal genome diversity of Pseudomonas aeruginosa clones CHA and TB

Oliver Ki Bezuidt
Jens Klockgether
Sylvie Elsen
Ina Attree
Colin F Davenport
Burkhard Tümmler

August 2015

Background: Adaptation of Pseudomonas aeruginosa to different living conditions is accompanied by mi...

Comparison of the global phylogenomic characteristics of the commensal and BSI collections.

Judit Burgaya (16734180)
Julie Marin (4793637)
Guilhem Royer (5212526)
Bénédicte Condamine (10752838)
Benoit Gachet (15448719)
Olivier Clermont (240697)
Françoise Jaureguy (16734183)
Charles Burdet (3440975)
Agnès Lefort (9666464)
Victoire de Lastours (5853464)
Erick Denamur (22049)
Marco Galardini (124666)
François Blanquart (3191950)

August 2023

(A) Pangenome sizes as a function of the number of genomes analyzed for the BSI (912 strains) and co...

Number of retrieved CTL genes in eukaryotes.

Domingo Jiménez-López (3582083)
Laura Aguilar-Henonin (208580)
Juan Manuel González-Prieto (4760250)
Victor Aguilar-Hernández (208578)
Plinio Guzmán (208584)

January 2018

The phylogenetic relationship between forty-one viridiplantae (six green algae and thirty-five em...

Data from: Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus

Biller, Steven J.
Berube, Paul M.
Berta-Thompson, Jessie W.
Kelly, Libusha
Roggensack, Sara E.
Awad, Lana
Roache-Johnson, Kathryn H.
Ding, Huiming
Giovannoni, Stephen J.
Moore, Lisa R.
Chisholm, Sallie W.

September 2014

The marine cyanobacterium Prochlorococcus is the numerically dominant photosynthetic organism in the...

Comparative genomics of plant-associated pseudomonas spp. : insights into diversity and inheritance of traits involved in multitrophic interactions

Loper, Joyce E
Hassan, Karl A
Henkels, Marcella D
Tetu, Sasha G
Rangel, Lorena I
Kidarsa, Teresa A
Wilson, Neil L
van de Mortel, Judith E
Song, Chunxu
Blumhagen, Rachel
Radune, Diana
Hostetler, Jessica B
Mavrodi, Dmitri V
Brinkac, Larren M
Durkin, A. Scott
Kluepfel, Daniel A
Wechter, W. Patrick
Anderson, Anne J
Kim, Young Cheol
Pierson III, Leland S
Pierson, Elizabeth A
Lindow, Steven E
Kobayashi, Donald Y
Davis II, Edward W
Raaijmakers, Jos M
Weller, David M
Thomashow, Linda S
Allen, Andrew E
Paulsen, Ian T
Lim, Chee Kent
Shaffer, Brenda T
Elbourne, Liam D. H
Stockwell, Virginia O
Hartney, Sierra L
Breakwell, Katy

January 2012

We provide here a comparative genome analysis of ten strains within the Pseudomonas fluorescens grou...

Using Genomics to Decipher the Enigmatic Properties and Survival Adaptation of Candidate Phyla Radiation

Maatouk, Mohamad
Rolain, Jean-Marc
Bittar, Fadi

May 2023

International audienceMicrobial ecology is a critical field for understanding the composition, diver...

Comparative analysis of genome sequences covering the seven cronobacter species.

Susan Joseph
Prerak Desai
Yongmei Ji
Craig A Cummings
Rita Shih
Lovorka Degoricija
Alain Rico
Pius Brzoska
Stephen E Hamby
Naqash Masood
Sumyya Hariri
Hana Sonbol
Nadia Chuzhanova
Michael McClelland
Manohar R Furtado
Stephen J Forsythe

Species of Cronobacter are widespread in the environment and are occasional food-borne pathogens ass...

The microbial differences associated with disease and risk variants.

Bahtiyar Yilmaz (5474447)
Marianne R. Spalinger (450521)
Luc Biedermann (139959)
Yannick Franc (5474453)
Nicolas Fournier (2842580)
Jean-Benoit Rossel (3145257)
Pascal Juillerat (5474450)
Gerhard Rogler (139954)
Andrew J. Macpherson (169088)
Michael Scharl (139957)

July 2018

The relative abundance of significantly different taxa (q<0.05) were plotted for PTPN2 variant in...

Relative abundance of strains within a taxon that contain at least one <i>cheR-TPR</i> gene.

Abstract

Extracted data

Relative abundance of strains within a taxon that contain at least one <i>cheR-TPR</i> gene.

Abstract

Extracted data

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