<p>Networks inferred using SparCC from the same data as in <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002687#pcbi-1002687-g001" target="_blank">Fig. 1</a> (see <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002687#pcbi.1002687.s003" target="_blank">Fig. S2</a> for SparCC networks of all HMP body sites). No correlations with magnitude greater than the 0.3 cutoff were inferred from the shuffled data (not shown). Nodes represent OTUs, with size reflecting the OTU's average fraction in the community, and color corresponding to the phylum to which the OTU belongs. Edges between nodes represent correlations between the nodes they connect, with edge width and shade indicating the correl...
<p>Red lines indicate positive correlations, while black lines indicate negative correlations. The l...
<p>Abbreviations: see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0041048#...
<p>Represents the significant Correlation Difference Probability Network for all Control vs. HIV coh...
<p>Correlation networks based on 16S rRNA gene survey data collected as part of the Human Microbiome...
<p>Basis data was simulated with a known correlation structure. OTU counts were generated by randoml...
<p>The association networks inferred from three HMP body sites: stool (<b>A</b>), buccal mucosa (<b>...
<p>Root-mean-square error (RMSE) of both Pearson (A) and SparCC (B) inferred correlations, as a func...
<p>The legend is common for figures A, B and D: The correlation network represents features that are...
<p>Thicker edges represent stronger absolute correlations. Left: true network of partial correlation...
<p>Proteins in either a combined HTP dataset (A) or the full HC dataset (B) were binned logarithmica...
<div><p>High-throughput sequencing based techniques, such as 16S rRNA gene profiling, have the poten...
<p>After computing the inter-regional correlations (left), three thresholds were applied (p < 0.05, ...
Baum_et_al_2019_Supplementary_Figures.pdf: Supplementary Figures S1 and S2. Legends are included und...
<p>The confidences of the edges are represented as percentage of the edges that persisted across 20...
<p>, and are the clustering coefficient indices proposed by <a href="http://www.plosone.org/articl...
<p>Red lines indicate positive correlations, while black lines indicate negative correlations. The l...
<p>Abbreviations: see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0041048#...
<p>Represents the significant Correlation Difference Probability Network for all Control vs. HIV coh...
<p>Correlation networks based on 16S rRNA gene survey data collected as part of the Human Microbiome...
<p>Basis data was simulated with a known correlation structure. OTU counts were generated by randoml...
<p>The association networks inferred from three HMP body sites: stool (<b>A</b>), buccal mucosa (<b>...
<p>Root-mean-square error (RMSE) of both Pearson (A) and SparCC (B) inferred correlations, as a func...
<p>The legend is common for figures A, B and D: The correlation network represents features that are...
<p>Thicker edges represent stronger absolute correlations. Left: true network of partial correlation...
<p>Proteins in either a combined HTP dataset (A) or the full HC dataset (B) were binned logarithmica...
<div><p>High-throughput sequencing based techniques, such as 16S rRNA gene profiling, have the poten...
<p>After computing the inter-regional correlations (left), three thresholds were applied (p < 0.05, ...
Baum_et_al_2019_Supplementary_Figures.pdf: Supplementary Figures S1 and S2. Legends are included und...
<p>The confidences of the edges are represented as percentage of the edges that persisted across 20...
<p>, and are the clustering coefficient indices proposed by <a href="http://www.plosone.org/articl...
<p>Red lines indicate positive correlations, while black lines indicate negative correlations. The l...
<p>Abbreviations: see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0041048#...
<p>Represents the significant Correlation Difference Probability Network for all Control vs. HIV coh...