Fst

R script file, contemporary population structure

Muir, Anna P.
Thomas, Rob
Biek, Roman
Mable, Barbara K.

May 2013

R script used in the contemporary population structure analyses (general linear models)

Scripts for mel-stripe selection analysis

Nosil, Patrik
Villoutreix, Romain
de Carvalho, Clarissa F.
Farkas, Tim E.
Soria-Carrasco, Victor
Feder, Jeff L.
Crespi, Bernard J.
Gompert, Zachariah

February 2018

This compressed directory contains two R scripts used to estimate selection coefficients for FHA (be...

Fst estimates for each locus - RANDOMIZED dataset

Leonardo Campagna (3262872)
Ilan Gronau (510042)
Luis Fabio Silveira (3263574)
Adam Siepel (51882)
Irby Lovette (3261018)

October 2016

Species are coded as follows: 1-S. bouvreuil; 2-S. pileata; 3-S. hypoxantha; 4-S. melanogaster; 5-S....

Fst

Nadeau, Nicola J.
Martin, Simon H.
Kozak, Krzysztof M.
Salazar, Camilo
Dasmahapatra, Kanchon K.
Davey, John W.
Baxter, Simon W.
Blaxter, Mark L.
Mallet, James
Jiggins, Chris D.

September 2012

R script used to calculate the Fst values for the major race and species comparisons discussed in th...

Data file: Fst values by species

Riginos, Cynthia

February 2014

Fst values used as estimates of population genetic structure. File formatted for input into R

Fst2

Nicola J. Nadeau (253527)
Simon H. Martin (433052)
Krzysztof M. Kozak (433048)
Camilo Salazar (47988)
Kanchon K. Dasmahapatra (433053)
John W. Davey (223405)
Simon W. Baxter (156960)
Mark L. Blaxter (115482)
James Mallet (19999)
Chris D. Jiggins (156976)

October 2016

R script used to calculate Fst between all pairs of populations. Inputs are as Fst.r

Stift_et_al_used_R_code

Stift, Marc
Kolar, Filip
Meirmans, Patrick G.

June 2019

This package contains the R-script used for simulating genetic data of two (or more) populations of ...

R script to calculate summary statistics from microsatellite data

Johansson, Mattias L.
Raimondi, Peter T.
Reed, Daniel C.
Coelho, Nelson C.
Serrão, Ester A.
Alberto, Filipe A.

July 2013

Script calculates mean number of alleles per locus, observed heterozygosity, expected heterozygosity...

R-script (code) to Fig. 1A-B and Table A1

Erik I. Svensson (74395)
Miguel A. Gomez-Llano (5017454)
Anais Rivas Torres (5017457)
Hanna M. Bensch (5017460)

March 2018

This file contains the R-script and code that can be used to generate Fig. 1A-B and Table A1 in the ...

R script: genetic differentiation

Jenkins, TL
Ellis, CD
Triantafyllidis, A
Stevens, JR

July 2019

R script used to analyse genetic differentiation. Analyses include global and pairwise Fst and Jost'...

SupplementFile2

Buonaccorsi, Vince P.
Malloy, Jacob
Peterson, Mark
Brubaker, Kristen
Grant, Chris J.

April 2017

R script "tryRollWindows.R" – for performing genome-anchored smoothed FST and diversity significance...

Pop. genetic comparisons R script

Rego, Alexandre
Messina, Frank J.
Gompert, Zachariah

April 2019

This R script provides analyses comparing patterns of allele frequency change and selection among li...

R script Summary Statistics

DeBiasse, Melissa B.
Nelson, Bradley J.
Hellberg, Michael E.

November 2013

This R script was used to calculates the summary statistics theta, nucleotide diversity, and PhiST f...

DifferetiationCalc

João D. Santos (3254496)

October 2016

R script for population differentiation and overall allelic richness calculation from uploaded Genep...

FST_files

Ashlee Shipham (3292644)
Leo Joseph (114181)
Daniel J. Schmidt (153419)
Alex Drew (5505593)
Ian Mason (5505596)
Jane M. Hughes (85960)

July 2018

The compressed file titled 'FST_files' contains six Fst output files generated by STACKS (three gene...

R script file, contemporary population structure

Muir, Anna P.
Thomas, Rob
Biek, Roman
Mable, Barbara K.

May 2013

R script used in the contemporary population structure analyses (general linear models)

Scripts for mel-stripe selection analysis

Nosil, Patrik
Villoutreix, Romain
de Carvalho, Clarissa F.
Farkas, Tim E.
Soria-Carrasco, Victor
Feder, Jeff L.
Crespi, Bernard J.
Gompert, Zachariah

February 2018

This compressed directory contains two R scripts used to estimate selection coefficients for FHA (be...

Fst estimates for each locus - RANDOMIZED dataset

Leonardo Campagna (3262872)
Ilan Gronau (510042)
Luis Fabio Silveira (3263574)
Adam Siepel (51882)
Irby Lovette (3261018)

October 2016

Species are coded as follows: 1-S. bouvreuil; 2-S. pileata; 3-S. hypoxantha; 4-S. melanogaster; 5-S....

Fst

Nadeau, Nicola J.
Martin, Simon H.
Kozak, Krzysztof M.
Salazar, Camilo
Dasmahapatra, Kanchon K.
Davey, John W.
Baxter, Simon W.
Blaxter, Mark L.
Mallet, James
Jiggins, Chris D.

September 2012

R script used to calculate the Fst values for the major race and species comparisons discussed in th...

Data file: Fst values by species

Riginos, Cynthia

February 2014

Fst values used as estimates of population genetic structure. File formatted for input into R

Fst2

Nicola J. Nadeau (253527)
Simon H. Martin (433052)
Krzysztof M. Kozak (433048)
Camilo Salazar (47988)
Kanchon K. Dasmahapatra (433053)
John W. Davey (223405)
Simon W. Baxter (156960)
Mark L. Blaxter (115482)
James Mallet (19999)
Chris D. Jiggins (156976)

October 2016

R script used to calculate Fst between all pairs of populations. Inputs are as Fst.r

Stift_et_al_used_R_code

Stift, Marc
Kolar, Filip
Meirmans, Patrick G.

June 2019

This package contains the R-script used for simulating genetic data of two (or more) populations of ...

R script to calculate summary statistics from microsatellite data

Johansson, Mattias L.
Raimondi, Peter T.
Reed, Daniel C.
Coelho, Nelson C.
Serrão, Ester A.
Alberto, Filipe A.

July 2013

Script calculates mean number of alleles per locus, observed heterozygosity, expected heterozygosity...

R-script (code) to Fig. 1A-B and Table A1

Erik I. Svensson (74395)
Miguel A. Gomez-Llano (5017454)
Anais Rivas Torres (5017457)
Hanna M. Bensch (5017460)

March 2018

This file contains the R-script and code that can be used to generate Fig. 1A-B and Table A1 in the ...

R script: genetic differentiation

Jenkins, TL
Ellis, CD
Triantafyllidis, A
Stevens, JR

July 2019

R script used to analyse genetic differentiation. Analyses include global and pairwise Fst and Jost'...

SupplementFile2

Buonaccorsi, Vince P.
Malloy, Jacob
Peterson, Mark
Brubaker, Kristen
Grant, Chris J.

April 2017

R script "tryRollWindows.R" – for performing genome-anchored smoothed FST and diversity significance...

Pop. genetic comparisons R script

Rego, Alexandre
Messina, Frank J.
Gompert, Zachariah

April 2019

This R script provides analyses comparing patterns of allele frequency change and selection among li...

R script Summary Statistics

DeBiasse, Melissa B.
Nelson, Bradley J.
Hellberg, Michael E.

November 2013

This R script was used to calculates the summary statistics theta, nucleotide diversity, and PhiST f...

DifferetiationCalc

João D. Santos (3254496)

October 2016

R script for population differentiation and overall allelic richness calculation from uploaded Genep...

FST_files

Ashlee Shipham (3292644)
Leo Joseph (114181)
Daniel J. Schmidt (153419)
Alex Drew (5505593)
Ian Mason (5505596)
Jane M. Hughes (85960)

July 2018

The compressed file titled 'FST_files' contains six Fst output files generated by STACKS (three gene...

R script file, contemporary population structure

Muir, Anna P.
Thomas, Rob
Biek, Roman
Mable, Barbara K.

May 2013

R script used in the contemporary population structure analyses (general linear models)

Scripts for mel-stripe selection analysis

Nosil, Patrik
Villoutreix, Romain
de Carvalho, Clarissa F.
Farkas, Tim E.
Soria-Carrasco, Victor
Feder, Jeff L.
Crespi, Bernard J.
Gompert, Zachariah

February 2018

This compressed directory contains two R scripts used to estimate selection coefficients for FHA (be...

Fst estimates for each locus - RANDOMIZED dataset

Leonardo Campagna (3262872)
Ilan Gronau (510042)
Luis Fabio Silveira (3263574)
Adam Siepel (51882)
Irby Lovette (3261018)

October 2016

Species are coded as follows: 1-S. bouvreuil; 2-S. pileata; 3-S. hypoxantha; 4-S. melanogaster; 5-S....

Abstract

Extracted data

Fst

Abstract

Extracted data

Related items

Related items