List of SNPs showing significant associations with total skin anthocyanin (TSA) concentration, pulp colour (PC) and skin and pulp colour together (SPC).

<p>This table shows significant nominal <i>P</i>-values obtained under Models A and B (<i>P</i><0.01). Significance was confirmed by 10 000 permutations for Model A. SNPs significant after Bonferroni correction for 15 genes are marked with *. Some SNPs that were not significant for TSA concentration, PC and SPC but were associated with other phenotypes are shown on <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0046021#pone.0046021.s003" target="_blank">Tables S3</a> and <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0046021#pone.0046021.s004" target="_blank">S4</a>. <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0046021#pone.0046021.s008" target="_blank">Table S8</a> shows location, MAF, Hardy Weinberg chi-squared and missing data for all the SNPs genotyped.