<p>Gene activity for all genes of the model is presented at distinct network states. A green box indicates activation whereas a red box denotes inactivation of a gene. (A) Summary of the analysis starting simulations from all possible initial states. All runs resulted in one of the three attractors shown. 49% of the simulations resulted in an attractor for the FHF (indicated in purple), 50% in an attractor mimicking the SHF state (indicated in blue) and 1% of the simulations yield an attractor without activation of core cardiac genes. (B) Simulation of time courses from expected initial states of the cardiac gene regulatory network model. Initial state setups differ only in the activation of canonical Wnt signaling at t = 3 (with exogen Can...
BACKGROUND: The ambition of most molecular biologists is the understanding of the intricate network ...
<div><p>Gene interactions in cells can be represented by gene regulatory networks. A Boolean network...
<p>We project PDMP-simulated gene expression distributions onto the first two principal components. ...
<p>Literature derived state descriptions are expected to appear in simulations, presented by a defin...
<p>For knock-down or overexpression a gene is set to 0 or 1, respectively, throughout the simulation...
<p>(A) Based on an initial state where all nodes are inactive, a simulation of a signaling cascade w...
<p>(A) A gene network can be described as a graph or as a matrix in which positive entries (green sq...
Two types of distinct cardiac progenitor cell populations can be identified during early heart devel...
<p>A)Wiring diagram for the eight-gene pluripotency network model, adapted from [<a href="http://www...
<p>(A) Simulation of the IGF sub-network lead to attractors A, B and C, the first of which could be ...
<p>A. Right panels display simulation results and data for mutant genotype, left panels show simulat...
<p>(A) Only genes included into the model and their regulations are shown. Regulations are based on ...
Mathematical models are useful for providing a framework for integrating data and gaining insights i...
Motivation: Boolean network models are suitable to simulate gene regulatory networks (GRNs) in the a...
Due to the limitations of available gene expression data, (i.e. noise and size of time series), mode...
BACKGROUND: The ambition of most molecular biologists is the understanding of the intricate network ...
<div><p>Gene interactions in cells can be represented by gene regulatory networks. A Boolean network...
<p>We project PDMP-simulated gene expression distributions onto the first two principal components. ...
<p>Literature derived state descriptions are expected to appear in simulations, presented by a defin...
<p>For knock-down or overexpression a gene is set to 0 or 1, respectively, throughout the simulation...
<p>(A) Based on an initial state where all nodes are inactive, a simulation of a signaling cascade w...
<p>(A) A gene network can be described as a graph or as a matrix in which positive entries (green sq...
Two types of distinct cardiac progenitor cell populations can be identified during early heart devel...
<p>A)Wiring diagram for the eight-gene pluripotency network model, adapted from [<a href="http://www...
<p>(A) Simulation of the IGF sub-network lead to attractors A, B and C, the first of which could be ...
<p>A. Right panels display simulation results and data for mutant genotype, left panels show simulat...
<p>(A) Only genes included into the model and their regulations are shown. Regulations are based on ...
Mathematical models are useful for providing a framework for integrating data and gaining insights i...
Motivation: Boolean network models are suitable to simulate gene regulatory networks (GRNs) in the a...
Due to the limitations of available gene expression data, (i.e. noise and size of time series), mode...
BACKGROUND: The ambition of most molecular biologists is the understanding of the intricate network ...
<div><p>Gene interactions in cells can be represented by gene regulatory networks. A Boolean network...
<p>We project PDMP-simulated gene expression distributions onto the first two principal components. ...