<p>Mining down in Gene Ontology structural networks of hierarchial tree of categories of biological process, from top most general biological processes in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0043551#pone-0043551-g002" target="_blank">Figure 2</a>, the most over-represented immune system process was further mining down levels by levels into its subcategories with all biological processes in each level shown in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0043551#pone.0043551.s001" target="_blank">Figure S1</a> and from each level, the over-represented biological processes are summarized here. Each color represents each level in the order from top to bottom as mining down the levels f...
<p>Yellow nodes represent gene ontology categories, red nodes are up-regulated genes, while green no...
<p>The hierarchy was created using hierarchical clustering: for each tissue, the mean expression of ...
(A) Volcano plot showing genes that were significant (padj 1.0) and downregulated (log2FC (B) Expres...
<p>(A) Cell killing. (B) Biological adhesion. (C) Multicellular organismal process. (D) Developmenta...
<p>The list of significantly changed genes was analyzed with Genomatix software and examined in term...
<p>From <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0043551#pone-0043551-g...
Processes are listed as–Log10 of adjusted FDR values. Top 15 relevant biological processes are chose...
<p>Gene ontology classification identified genes related to an immune system process for each tissue...
<p>A Hierarchical representation of GO terms for biological processes. Panel (A) Represents lower le...
For biological systems, structure and hence function are hierarchically organized at multiple scales...
A. A map with the Biological Process terms listed (left), amino acid sequence conservation in 3 grou...
<p>Biological processes from Gene Ontology associated with consistently differentially expressed gen...
We recently implemented improvements to the representation of immunology content of the biological p...
<p>Colored keys represent the fold changes (log<sub>2</sub> transformed counts) of gene expression b...
<p>The portion of the directed acyclic graph (DAG) containing all paths from the root biological pro...
<p>Yellow nodes represent gene ontology categories, red nodes are up-regulated genes, while green no...
<p>The hierarchy was created using hierarchical clustering: for each tissue, the mean expression of ...
(A) Volcano plot showing genes that were significant (padj 1.0) and downregulated (log2FC (B) Expres...
<p>(A) Cell killing. (B) Biological adhesion. (C) Multicellular organismal process. (D) Developmenta...
<p>The list of significantly changed genes was analyzed with Genomatix software and examined in term...
<p>From <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0043551#pone-0043551-g...
Processes are listed as–Log10 of adjusted FDR values. Top 15 relevant biological processes are chose...
<p>Gene ontology classification identified genes related to an immune system process for each tissue...
<p>A Hierarchical representation of GO terms for biological processes. Panel (A) Represents lower le...
For biological systems, structure and hence function are hierarchically organized at multiple scales...
A. A map with the Biological Process terms listed (left), amino acid sequence conservation in 3 grou...
<p>Biological processes from Gene Ontology associated with consistently differentially expressed gen...
We recently implemented improvements to the representation of immunology content of the biological p...
<p>Colored keys represent the fold changes (log<sub>2</sub> transformed counts) of gene expression b...
<p>The portion of the directed acyclic graph (DAG) containing all paths from the root biological pro...
<p>Yellow nodes represent gene ontology categories, red nodes are up-regulated genes, while green no...
<p>The hierarchy was created using hierarchical clustering: for each tissue, the mean expression of ...
(A) Volcano plot showing genes that were significant (padj 1.0) and downregulated (log2FC (B) Expres...