<p>The weight of the pathway net probability fluxes, obtained by <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002721#pcbi.1002721.e006" target="_blank">equation (5)</a>, is given by the numbers besides the colored graphs (as fraction of unity) and, for values >0.030, also encoded by the thickness of the arrows. Fluxes from 0.002 to 0.030 are illustrated by equally thick dotted arrows. All other fluxes are only very small (<4.5×10<sup>−4</sup>) and therefore not represented by arrows. For further explanation see text. (<i>A</i>) Pathway net probability fluxes along the pathways <i>C</i><sub>0</sub> to <i>O</i><sub>4</sub> (red) and <i>O</i><sub>0</sub> to <i>O</i><sub>4</sub> (blue) after switching to 7.5 µM fc...
The stability free-energy parameters (ΔGR1, ΔGR2, ΔGRT1, ΔGRT2, Δgint,R, Δgint,T) vary randomly with...
International audienceWe propose a new geometric approach to describe the qualitative dynamics of ch...
<p>Three alternative flux distributions that maximize the number of reactions whose flux is consiste...
<p>The illustration is analogous to <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/jo...
<p>The total net probability fluxes per transition, <i>F</i><sub>XY</sub> (given as fraction of unit...
<p>(A-B) fast (<i>k</i><sub>+</sub><i>c</i><sub>0</sub> = 20<i>s</i><sup>−1</sup>, <i>k</i><sub>−</s...
<p>(A) Flux directions between glycolysis and the PP pathway. (B) Relative flux of the PP pathway (R...
<p>The molecular flux through individual reactions was obtained from the biochemical models running ...
<p>A) Probability density estimates for the flux values in selected reactions as obtained by random ...
<p>(<i>A</i>) The C4L-O4L model is composed of five closed (<i>C</i><sub>x</sub>) and five open stat...
<p>Active pathways at start. The same network as in <a href="http://www.plosone.org/article/info:doi...
Motivation: Flux balance analysis (FBA) is a well-known technique for genome-scale modeling of metab...
<p>Letters and numbers in parentheses refer, respectively, to input data and to the stages of the wo...
<p>The sign of the correlation is color coded (positive/negative, +/-, black/red) and arrow size is ...
<p><b>(A)</b> Relationship between ECexp of a pathway and pathway size (the number of genes assigned...
The stability free-energy parameters (ΔGR1, ΔGR2, ΔGRT1, ΔGRT2, Δgint,R, Δgint,T) vary randomly with...
International audienceWe propose a new geometric approach to describe the qualitative dynamics of ch...
<p>Three alternative flux distributions that maximize the number of reactions whose flux is consiste...
<p>The illustration is analogous to <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/jo...
<p>The total net probability fluxes per transition, <i>F</i><sub>XY</sub> (given as fraction of unit...
<p>(A-B) fast (<i>k</i><sub>+</sub><i>c</i><sub>0</sub> = 20<i>s</i><sup>−1</sup>, <i>k</i><sub>−</s...
<p>(A) Flux directions between glycolysis and the PP pathway. (B) Relative flux of the PP pathway (R...
<p>The molecular flux through individual reactions was obtained from the biochemical models running ...
<p>A) Probability density estimates for the flux values in selected reactions as obtained by random ...
<p>(<i>A</i>) The C4L-O4L model is composed of five closed (<i>C</i><sub>x</sub>) and five open stat...
<p>Active pathways at start. The same network as in <a href="http://www.plosone.org/article/info:doi...
Motivation: Flux balance analysis (FBA) is a well-known technique for genome-scale modeling of metab...
<p>Letters and numbers in parentheses refer, respectively, to input data and to the stages of the wo...
<p>The sign of the correlation is color coded (positive/negative, +/-, black/red) and arrow size is ...
<p><b>(A)</b> Relationship between ECexp of a pathway and pathway size (the number of genes assigned...
The stability free-energy parameters (ΔGR1, ΔGR2, ΔGRT1, ΔGRT2, Δgint,R, Δgint,T) vary randomly with...
International audienceWe propose a new geometric approach to describe the qualitative dynamics of ch...
<p>Three alternative flux distributions that maximize the number of reactions whose flux is consiste...