Phylogeny of 12 Ascomycota classes inferred from maximum likelihood analysis based on rRNA secondary structure signature.

Evolution of micromorphological and chemical characters in the lichen-forming fungal family Pertusariaceae

Lumbsch, H. T.
Schmitt, I.
Barker, D.
Pagel, M.

January 2006

Micromorphological characters of the fruiting bodies, such as ascus-type and hymenial amyloidity, an...

The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits

Schoch, C.L.
Sung, G.H.
López-Giráldez, F.
Townsend, J.P.
Miadlikowska, J.
Hofstetter, V.
Robbertse, B.
Brandon Matheny, P.
Kauff, F.
Wang, Z.
Gueidan, C.
Andrie, R.M.
Trippe, K.
Ciufetti, L.M.
Wynns, A.
Fraker, E.
Hodkinson, B.P.
Bonito, G.
Groenewald, J.Z.
Arzanlou, M.
Hoog, G.S., de
Crous, P.W.
Hewitt, D.
Pfister, D.H.
Peterson, K.
Gryzenhout, M.
Wingfield, M.J.
Aptroot, A.
Suh, S.O.
Blackwell, M.
Hillis, D.M.
Griffith, G.W.
Castlebury, L.A.
Rossman, A.Y.
Lumbsch, H.T.
Lücking, R.
Büdel, B.
Rauhut, A.
Diederich, P.
Ertz, D.
Geiser, D.M.
Hosaka, K.
Inderbitzin, P.
Kohlmeyer, J.
Volkmann-Kohlmeyer, B.
Mostert, L.
O'Donnell, K.
Sipman, H.
Rogers, J.D.
Shoemaker, R.A.
Sugiyama, J.
Summerbell, R.C.
Untereiner, W.
Johnston, P.R.
Stenroos, S.
Zuccaro, A.
Dyer, P.S.
Crittenden, P.D.
Cole, M.S.
Hansen, K.
Trappe, J.M.
Yahr, R.
Lutzoni, F.
Spatafora, J.W.

January 2009

We present a 6-gene, 420-species maximum-likelihood phylogeny of Ascomycota, the largest phylum of F...

The Ascomycota Tree of Life: A Phylum-wide Phylogeny Clarifies the Origin and Evolution of Fundamental Reproductive and Ecological Traits

Schoch, C.L.
Sung, G.H.
Lopez-Giraldez, F.
Townsend, J.P.
Miadlikowska, J.
Hofstetter, V.
Robbertse, B.
Matheny, P.B.
Kauff, F.
Wang, Z.
Gueidan, C.
Andrie, R.M.
Trippe, K.
Ciufetti, L.M.
Wynns, A.
Fraker, E.
Hodkinson, B.P.
Bonito, G.
Groenewald, J.Z.
Arzanlou, M.
de Hoog, G.S.
Crous, P.W.
Hewitt, D.
Pfister, D.H.
Peterson, K.
Gryzenhout, M.
Wingfield, M.J.
Aptroot, A.
Suh, S.O.
Blackwell, M.
Hillis, D.M.
Griffith, G.W.
Castlebury, L.A.
Rossman, A.Y.
Lumbsch, H.T.
Lucking, R.
Budel, B.
Rauhut, A.
Diederich, P.
Ertz, D.
Geiser, D.M.
Hosaka, K.
Inderbitzin, P.
Kohlmeyer, J.
Volkmann-Kohlmeyer, B.
Mostert, L.
O'Donnell, K.
Sipman, H.
Rogers, J.
Shoemaker, R.A.
Sugiyama, J.
Summerbell, R.C.
Untereiner, W.A.
Johnston, P.R.
Stenroos, S.
Zuccaro, A.
Dyer, P.S.
Crittenden, P.D.
Cole, M.S.
Hansen, K.
Trappe, J.M.
Yahr, R.
Lutzoni, F.
Spatafora, J.W.

January 2009

We present a 6-gene, 420-species maximum-likelihood phylogeny of Ascomycota, the largest phylum of F...

Phylogeny of 12 Ascomycota classes inferred from nucleotide sequences using maximum likelihood approach.

Wen-Ying Zhuang (124174)
Chao-Yang Liu (124176)

October 2012

From left to right, numbers at nodes showing MLBP (>50%), MPBP (>50%) and BIPP (>90%), respective...

Ancestral state reconstruction of ascoma shape for 12 classes of Ascomycota based on rRNA secondary structure signatures.

Wen-Ying Zhuang (124174)
Chao-Yang Liu (124176)

October 2012

Character states were reconstructed using maximum likelihood and maximum parsimony methods based ...

What an rRNA Secondary Structure Tells about Phylogeny of Fungi in Ascomycota with Emphasis on Evolution of Major Types of Ascus

Zhuang Wen-Ying
Liu Chao-Yang

October 2012

RNA secondary structure is highly conserved throughout evolution. The higher order structure is fund...

What an rRNA secondary structure tells about phylogeny of fungi in Ascomycota with emphasis on evolution of major types of ascus.

Wen-Ying Zhuang
Chao-Yang Liu

BACKGROUND: RNA secondary structure is highly conserved throughout evolution. The higher order struc...

Bayesian 50% majority-rule consensus phylogeny of the Ascomycota based on rDNA.

Zheng Wang (25883)
Peter R. Johnston (224230)
Zhu L. Yang (163733)
Jeffrey P. Townsend (12372)

February 2013

Branches with posterior probabilities ≥0.95 are bold. MP bootstrap values ≥80% are red. Notably l...

Phylogeny of Aspergillus sect. Fumigati inferred from combined data: benA, CaM, act and RPB2

Hubka, Vit
Barrs, Vanessa
Dudová, Zuzana
Sklenář, František
Kubátová, Alena
Matsuzawa, Tetsuhiro
Yaguchi, Takashi
Horie, Yoshikazu
Nováková, Alena
Frisvad, Jens C.
Talbot, Jessica
Kolařík, Miroslav

August 2018

Phylogenetic relationships of the section Fumigati members inferred from Bayesian analysis of the co...

Testing the phylogenetic utility of MCM7 in the Ascomycota

Huzefa Raja
Conrad L. Schoch
Vincent Hustad
Carol Shearer
Andrew Miller

September 2011

The Ascomycota are a group of filamentous fungi that occur as saprobes, pathogens and symbionts of i...

Basidiomycota phylogenetic tree.

Diogo N. Silva (571935)
Sebastien Duplessis (2203750)
Pedro Talhinhas (833399)
Helena Azinheira (833400)
Octávio S. Paulo (430237)
Dora Batista (833401)

December 2015

Maximum likelihood tree estimated illustrating the evolutionary relationships among 67 Basidiomyc...

Aspergillus sect. Aspergillus: Tree based on RPB2

Chen, Amanda Juan
Hubka, Vit
Frisvad, Jens C.
Visagie, Cobus M.
Houbraken, Jos
Meijer, Martin
Varga, Janos
Demirel, Rasime
Jurjević, Željko
Kubátová, Alena
Sklenář, František
Zhou, Y. G.
Samson, Robert A.

July 2017

A 50% majority rule Maximum likelihood consensus tree based on partial RNA polymerase II second larg...

Maximum likelihood (ML) phylogenetic tree of ribosomal gene sequences.

Olga A. Glazunova (5329184)
Natalia V. Shakhova (5329193)
Nadezhda V. Psurtseva (5329187)
Konstantin V. Moiseenko (3842116)
Sergei Y. Kleimenov (5329190)
Tatiana V. Fedorova (3842110)

June 2018

Numbers at nodes are bootstrap percentages from 100 replicates. Fungi from the residual and the c...

Phylogeny of Aspergillus viridinutans species complex phylogeny inferred from combined data: BenA, CaM, act, RPB2

Hubka, Vit
Barrs, Vanessa
Dudová, Zuzana
Sklenář, František
Kubátová, Alena
Matsuzawa, Tetsuhiro
Yaguchi, Takashi
Horie, Yoshikazu
Nováková, Alena
Frisvad, Jens C.
Talbot, Jessica
Kolařík, Miroslav

August 2018

Phylogenetic relationships of the section Aspergillus viridinutans species complex members inferred ...

Utility of nuclear SSU and LSU rDNA data sets to discover the ordinal placement of the Coccotremataceae (Ascomycota)

Lumbsch, Thorsten
Schmitt, Imke
Messuti, Maria Ines

December 2001

AbstractInformal ascomycete classifications have traditionally been based in part on ascomatal morph...

Evolution of micromorphological and chemical characters in the lichen-forming fungal family Pertusariaceae

Lumbsch, H. T.
Schmitt, I.
Barker, D.
Pagel, M.

January 2006

Micromorphological characters of the fruiting bodies, such as ascus-type and hymenial amyloidity, an...

The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits

Schoch, C.L.
Sung, G.H.
López-Giráldez, F.
Townsend, J.P.
Miadlikowska, J.
Hofstetter, V.
Robbertse, B.
Brandon Matheny, P.
Kauff, F.
Wang, Z.
Gueidan, C.
Andrie, R.M.
Trippe, K.
Ciufetti, L.M.
Wynns, A.
Fraker, E.
Hodkinson, B.P.
Bonito, G.
Groenewald, J.Z.
Arzanlou, M.
Hoog, G.S., de
Crous, P.W.
Hewitt, D.
Pfister, D.H.
Peterson, K.
Gryzenhout, M.
Wingfield, M.J.
Aptroot, A.
Suh, S.O.
Blackwell, M.
Hillis, D.M.
Griffith, G.W.
Castlebury, L.A.
Rossman, A.Y.
Lumbsch, H.T.
Lücking, R.
Büdel, B.
Rauhut, A.
Diederich, P.
Ertz, D.
Geiser, D.M.
Hosaka, K.
Inderbitzin, P.
Kohlmeyer, J.
Volkmann-Kohlmeyer, B.
Mostert, L.
O'Donnell, K.
Sipman, H.
Rogers, J.D.
Shoemaker, R.A.
Sugiyama, J.
Summerbell, R.C.
Untereiner, W.
Johnston, P.R.
Stenroos, S.
Zuccaro, A.
Dyer, P.S.
Crittenden, P.D.
Cole, M.S.
Hansen, K.
Trappe, J.M.
Yahr, R.
Lutzoni, F.
Spatafora, J.W.

January 2009

We present a 6-gene, 420-species maximum-likelihood phylogeny of Ascomycota, the largest phylum of F...

The Ascomycota Tree of Life: A Phylum-wide Phylogeny Clarifies the Origin and Evolution of Fundamental Reproductive and Ecological Traits

Schoch, C.L.
Sung, G.H.
Lopez-Giraldez, F.
Townsend, J.P.
Miadlikowska, J.
Hofstetter, V.
Robbertse, B.
Matheny, P.B.
Kauff, F.
Wang, Z.
Gueidan, C.
Andrie, R.M.
Trippe, K.
Ciufetti, L.M.
Wynns, A.
Fraker, E.
Hodkinson, B.P.
Bonito, G.
Groenewald, J.Z.
Arzanlou, M.
de Hoog, G.S.
Crous, P.W.
Hewitt, D.
Pfister, D.H.
Peterson, K.
Gryzenhout, M.
Wingfield, M.J.
Aptroot, A.
Suh, S.O.
Blackwell, M.
Hillis, D.M.
Griffith, G.W.
Castlebury, L.A.
Rossman, A.Y.
Lumbsch, H.T.
Lucking, R.
Budel, B.
Rauhut, A.
Diederich, P.
Ertz, D.
Geiser, D.M.
Hosaka, K.
Inderbitzin, P.
Kohlmeyer, J.
Volkmann-Kohlmeyer, B.
Mostert, L.
O'Donnell, K.
Sipman, H.
Rogers, J.
Shoemaker, R.A.
Sugiyama, J.
Summerbell, R.C.
Untereiner, W.A.
Johnston, P.R.
Stenroos, S.
Zuccaro, A.
Dyer, P.S.
Crittenden, P.D.
Cole, M.S.
Hansen, K.
Trappe, J.M.
Yahr, R.
Lutzoni, F.
Spatafora, J.W.

January 2009

We present a 6-gene, 420-species maximum-likelihood phylogeny of Ascomycota, the largest phylum of F...

Phylogeny of 12 Ascomycota classes inferred from nucleotide sequences using maximum likelihood approach.

Wen-Ying Zhuang (124174)
Chao-Yang Liu (124176)

October 2012

From left to right, numbers at nodes showing MLBP (>50%), MPBP (>50%) and BIPP (>90%), respective...

Ancestral state reconstruction of ascoma shape for 12 classes of Ascomycota based on rRNA secondary structure signatures.

Wen-Ying Zhuang (124174)
Chao-Yang Liu (124176)

October 2012

Character states were reconstructed using maximum likelihood and maximum parsimony methods based ...

What an rRNA Secondary Structure Tells about Phylogeny of Fungi in Ascomycota with Emphasis on Evolution of Major Types of Ascus

Zhuang Wen-Ying
Liu Chao-Yang

October 2012

RNA secondary structure is highly conserved throughout evolution. The higher order structure is fund...

What an rRNA secondary structure tells about phylogeny of fungi in Ascomycota with emphasis on evolution of major types of ascus.

Wen-Ying Zhuang
Chao-Yang Liu

BACKGROUND: RNA secondary structure is highly conserved throughout evolution. The higher order struc...

Bayesian 50% majority-rule consensus phylogeny of the Ascomycota based on rDNA.

Zheng Wang (25883)
Peter R. Johnston (224230)
Zhu L. Yang (163733)
Jeffrey P. Townsend (12372)

February 2013

Branches with posterior probabilities ≥0.95 are bold. MP bootstrap values ≥80% are red. Notably l...

Phylogeny of Aspergillus sect. Fumigati inferred from combined data: benA, CaM, act and RPB2

Hubka, Vit
Barrs, Vanessa
Dudová, Zuzana
Sklenář, František
Kubátová, Alena
Matsuzawa, Tetsuhiro
Yaguchi, Takashi
Horie, Yoshikazu
Nováková, Alena
Frisvad, Jens C.
Talbot, Jessica
Kolařík, Miroslav

August 2018

Phylogenetic relationships of the section Fumigati members inferred from Bayesian analysis of the co...

Testing the phylogenetic utility of MCM7 in the Ascomycota

Huzefa Raja
Conrad L. Schoch
Vincent Hustad
Carol Shearer
Andrew Miller

September 2011

The Ascomycota are a group of filamentous fungi that occur as saprobes, pathogens and symbionts of i...

Basidiomycota phylogenetic tree.

Diogo N. Silva (571935)
Sebastien Duplessis (2203750)
Pedro Talhinhas (833399)
Helena Azinheira (833400)
Octávio S. Paulo (430237)
Dora Batista (833401)

December 2015

Maximum likelihood tree estimated illustrating the evolutionary relationships among 67 Basidiomyc...

Aspergillus sect. Aspergillus: Tree based on RPB2

Chen, Amanda Juan
Hubka, Vit
Frisvad, Jens C.
Visagie, Cobus M.
Houbraken, Jos
Meijer, Martin
Varga, Janos
Demirel, Rasime
Jurjević, Željko
Kubátová, Alena
Sklenář, František
Zhou, Y. G.
Samson, Robert A.

July 2017

A 50% majority rule Maximum likelihood consensus tree based on partial RNA polymerase II second larg...

Maximum likelihood (ML) phylogenetic tree of ribosomal gene sequences.

Olga A. Glazunova (5329184)
Natalia V. Shakhova (5329193)
Nadezhda V. Psurtseva (5329187)
Konstantin V. Moiseenko (3842116)
Sergei Y. Kleimenov (5329190)
Tatiana V. Fedorova (3842110)

June 2018

Numbers at nodes are bootstrap percentages from 100 replicates. Fungi from the residual and the c...

Phylogeny of Aspergillus viridinutans species complex phylogeny inferred from combined data: BenA, CaM, act, RPB2

Hubka, Vit
Barrs, Vanessa
Dudová, Zuzana
Sklenář, František
Kubátová, Alena
Matsuzawa, Tetsuhiro
Yaguchi, Takashi
Horie, Yoshikazu
Nováková, Alena
Frisvad, Jens C.
Talbot, Jessica
Kolařík, Miroslav

August 2018

Phylogenetic relationships of the section Aspergillus viridinutans species complex members inferred ...

Utility of nuclear SSU and LSU rDNA data sets to discover the ordinal placement of the Coccotremataceae (Ascomycota)

Lumbsch, Thorsten
Schmitt, Imke
Messuti, Maria Ines

December 2001

AbstractInformal ascomycete classifications have traditionally been based in part on ascomatal morph...

Evolution of micromorphological and chemical characters in the lichen-forming fungal family Pertusariaceae

Lumbsch, H. T.
Schmitt, I.
Barker, D.
Pagel, M.

January 2006

Micromorphological characters of the fruiting bodies, such as ascus-type and hymenial amyloidity, an...

The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits

Schoch, C.L.
Sung, G.H.
López-Giráldez, F.
Townsend, J.P.
Miadlikowska, J.
Hofstetter, V.
Robbertse, B.
Brandon Matheny, P.
Kauff, F.
Wang, Z.
Gueidan, C.
Andrie, R.M.
Trippe, K.
Ciufetti, L.M.
Wynns, A.
Fraker, E.
Hodkinson, B.P.
Bonito, G.
Groenewald, J.Z.
Arzanlou, M.
Hoog, G.S., de
Crous, P.W.
Hewitt, D.
Pfister, D.H.
Peterson, K.
Gryzenhout, M.
Wingfield, M.J.
Aptroot, A.
Suh, S.O.
Blackwell, M.
Hillis, D.M.
Griffith, G.W.
Castlebury, L.A.
Rossman, A.Y.
Lumbsch, H.T.
Lücking, R.
Büdel, B.
Rauhut, A.
Diederich, P.
Ertz, D.
Geiser, D.M.
Hosaka, K.
Inderbitzin, P.
Kohlmeyer, J.
Volkmann-Kohlmeyer, B.
Mostert, L.
O'Donnell, K.
Sipman, H.
Rogers, J.D.
Shoemaker, R.A.
Sugiyama, J.
Summerbell, R.C.
Untereiner, W.
Johnston, P.R.
Stenroos, S.
Zuccaro, A.
Dyer, P.S.
Crittenden, P.D.
Cole, M.S.
Hansen, K.
Trappe, J.M.
Yahr, R.
Lutzoni, F.
Spatafora, J.W.

January 2009

We present a 6-gene, 420-species maximum-likelihood phylogeny of Ascomycota, the largest phylum of F...

The Ascomycota Tree of Life: A Phylum-wide Phylogeny Clarifies the Origin and Evolution of Fundamental Reproductive and Ecological Traits

Schoch, C.L.
Sung, G.H.
Lopez-Giraldez, F.
Townsend, J.P.
Miadlikowska, J.
Hofstetter, V.
Robbertse, B.
Matheny, P.B.
Kauff, F.
Wang, Z.
Gueidan, C.
Andrie, R.M.
Trippe, K.
Ciufetti, L.M.
Wynns, A.
Fraker, E.
Hodkinson, B.P.
Bonito, G.
Groenewald, J.Z.
Arzanlou, M.
de Hoog, G.S.
Crous, P.W.
Hewitt, D.
Pfister, D.H.
Peterson, K.
Gryzenhout, M.
Wingfield, M.J.
Aptroot, A.
Suh, S.O.
Blackwell, M.
Hillis, D.M.
Griffith, G.W.
Castlebury, L.A.
Rossman, A.Y.
Lumbsch, H.T.
Lucking, R.
Budel, B.
Rauhut, A.
Diederich, P.
Ertz, D.
Geiser, D.M.
Hosaka, K.
Inderbitzin, P.
Kohlmeyer, J.
Volkmann-Kohlmeyer, B.
Mostert, L.
O'Donnell, K.
Sipman, H.
Rogers, J.
Shoemaker, R.A.
Sugiyama, J.
Summerbell, R.C.
Untereiner, W.A.
Johnston, P.R.
Stenroos, S.
Zuccaro, A.
Dyer, P.S.
Crittenden, P.D.
Cole, M.S.
Hansen, K.
Trappe, J.M.
Yahr, R.
Lutzoni, F.
Spatafora, J.W.

January 2009

We present a 6-gene, 420-species maximum-likelihood phylogeny of Ascomycota, the largest phylum of F...

Phylogeny of 12 Ascomycota classes inferred from maximum likelihood analysis based on rRNA secondary structure signature.

Abstract

Extracted data

Phylogeny of 12 Ascomycota classes inferred from maximum likelihood analysis based on rRNA secondary structure signature.

Abstract

Extracted data

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