KEGG Pathway Analysis of Differentially Expressed Proteins.

Stephanie M. Cologna (125652)
Xiao-Sheng Jiang (125654)
Peter S. Backlund (125656)
Celine V. M. Cluzeau (125659)
Michelle K. Dail (125662)
Nicole M. Yanjanin (125664)
Stephan Siebel (125667)
Cynthia L. Toth (125671)
Hyun-sik Jun (125674)
Christopher A. Wassif (125679)
Alfred L. Yergey (125683)
Forbes D. Porter (125687)

Publication date

October 2012

DOI

10.1371/journal.pone.0047845.t001

Abstract

KEGG pathway analysis of the top ten significant pathways altered in the Npc1−/− mouse cerebella. The pathway along with the number of proteins associated with the pathway and the p-value are provided.</p

Extracted data

Jiarui Feng (3817189)
S. Peter Goedegebuure (10677620)
Amanda Zeng (17743401)
Ye Bi (129496)
Ting Wang (16292)
Philip Payne (237866)
Li Ding (16240)
David DeNardo (14879676)
William Hawkins (733806)
Ryan C. Fields (15127510)
Fuhai Li (203913)

January 2024

Activated KEGG pathway networks of AD pathology for excitatory neurons identified by sc2MeNetDrug (m...

KEGG pathways enriched for co-expressed mRNAs in Cytoscape network.

Maria Fernanda da Silva Lopes (14564171)
Juliana de Souza Felix (14564174)
Natália Francisco Scaramele (14564177)
Mariana Cordeiro Almeida (14564180)
Amanda de Oliveira Furlan (14564183)
Jéssica Antonini Troiano (14564186)
Flávia Regina Florêncio de Athayde (14564189)
Flávia Lombardi Lopes (6058841)

February 2023

KEGG pathway enrichment analysis was performed in gProfiler. The y-axis represents the KEGG pathways...

The significant pathway of protein processing in endoplasmic reticulum (p = 0.0329) for differential proteins and the differential protein level in Comparison 3.

Li Ping Li (603571)
Wei Liu (20030)
Hong Liu (50694)
Fang Zhu (185566)
Da Zhi Zhang (741315)
Hui Shen (66625)
Zheng Xu (162992)
Yun Peng Qi (741316)
Shi Qun Zhang (741317)
Si Min Chen (603573)
Li Juan He (603574)
Xin Ju Cao (741318)
Xin Huang (11077)
Jun Dong Zhang (603572)
Lan Yan (358053)
Mao Mao An (603576)
Yuan Ying Jiang (603577)

May 2015

(A) For each rectangular shape, red shapes indicate down-regulated proteins, while green shapes i...

KEGG pathway analysis for significantly differentially expressed genes (A) between SS2-infected A/J and control A/J mice and (B) between SS2-infected B6 and control B6 mice.

Jie Rong (181453)
Wei Zhang (405)
Xiaohui Wang (19899)
Hongjie Fan (167764)
Chengping Lu (167772)
Huochun Yao (181458)

February 2012

P value<0.05 and FDR<0.05 were used as thresholds to select significant KEGG pathways. LgP...

Pathway analysis.

Yukino Hatazawa (538351)
Miki Tadaishi (219200)
Yuta Nagaike (538352)
Akihito Morita (538353)
Yoshihiro Ogawa (15560)
Osamu Ezaki (219242)
Takako Takai-Igarashi (219197)
Yasuyuki Kitaura (538354)
Yoshiharu Shimomura (392025)
Yasutomi Kamei (219165)
Shinji Miura (219238)

March 2014

Compared with WT mice, 315 genes were found to be up-regulated in PGC-1α Tg mice by microarray an...

KEGG pathway analysis of the differentially expressed proteins (top eight pathways).

Shujiang Zhang (5917007)
Chengcheng Zheng (5917010)
Shunheng Yao (5917013)
Zhonghui Wang (4089880)
Li Xu (108702)
Rongfu Yang (5917016)
Xiang Meng (383515)
Jianhui Wu (385334)
Li Zhou (54356)
Zuyue Sun (5917019)

October 2018

KEGG pathway analysis of the differentially expressed proteins (top eight pathways).</p

KEGG analysis of up- and down-regulated genes.

Xiaohan Chen (384089)
Digang Zeng (384083)
Xiuli Chen (384084)
Daxiang Xie (384085)
Yongzhen Zhao (384086)
Chunling Yang (384087)
Yongmei Li (227480)
Ning Ma (155058)
Ming Li (91180)
Qiong Yang (28822)
Zhenping Liao (384088)
Hui Wang (30400)

August 2013

The top 30 pathways are shown. The x axis shows pathways from KEGG classification and the y axis ...

KEGG signaling pathway analysis of significantly regulated hypothalamic proteins.

Wei-na Cong (125752)
Huan Cai (105610)
Rui Wang (52434)
Caitlin M. Daimon (105618)
Stuart Maudsley (48794)
Kerstin Raber (125758)
Fabio Canneva (125763)
Stephan von Hörsten (125769)
Bronwen Martin (48785)

October 2012

Proteins significantly regulated in tgHD rats compared to WT controls were used as input data for...

KEGG signalling pathways overrepresented by gene-protein pairs found to be significantly deregulated in high-dose samples in comparison to controls.

Anna Papiez (6166616)
Omid Azimzadeh (193552)
Tamara Azizova (3561572)
Maria Moseeva (6166619)
Natasa Anastasov (6166622)
Jan Smida (451744)
Soile Tapio (193566)
Joanna Polanska (398872)

December 2018

The pathways in the left column were obtained from the intersection of enriched pathways from signif...

Enriched KEGG Pathways for the lists of differentially expressed proteins in spleen leukocytes from 2 week and 4 week old NOD mice compared to two control strains.

Jian Wu (41301)
Dorothy N. Kakoola (129190)
Nataliya I. Lenchik (129192)
Dominic M. Desiderio (129194)
Dana R. Marshall (129196)
Ivan C. Gerling (129198)

October 2012

One-way ANOVA (p<0.05) of protein expression data followed by hierarchical clustering and protein...

Activated KEGG pathway networks of AD pathology for excitatory neurons identified by sc2MeNetDrug (mice cohort).

Jiarui Feng (3817189)
S. Peter Goedegebuure (10677620)
Amanda Zeng (17743401)
Ye Bi (129496)
Ting Wang (16292)
Philip Payne (237866)
Li Ding (16240)
David DeNardo (14879676)
William Hawkins (733806)
Ryan C. Fields (15127510)
Fuhai Li (203913)

January 2024

Activated KEGG pathway networks of AD pathology for excitatory neurons identified by sc2MeNetDrug (m...

KEGG pathways enriched for co-expressed mRNAs in Cytoscape network.

Maria Fernanda da Silva Lopes (14564171)
Juliana de Souza Felix (14564174)
Natália Francisco Scaramele (14564177)
Mariana Cordeiro Almeida (14564180)
Amanda de Oliveira Furlan (14564183)
Jéssica Antonini Troiano (14564186)
Flávia Regina Florêncio de Athayde (14564189)
Flávia Lombardi Lopes (6058841)

February 2023

KEGG pathway enrichment analysis was performed in gProfiler. The y-axis represents the KEGG pathways...

The significant pathway of protein processing in endoplasmic reticulum (p = 0.0329) for differential proteins and the differential protein level in Comparison 3.

Li Ping Li (603571)
Wei Liu (20030)
Hong Liu (50694)
Fang Zhu (185566)
Da Zhi Zhang (741315)
Hui Shen (66625)
Zheng Xu (162992)
Yun Peng Qi (741316)
Shi Qun Zhang (741317)
Si Min Chen (603573)
Li Juan He (603574)
Xin Ju Cao (741318)
Xin Huang (11077)
Jun Dong Zhang (603572)
Lan Yan (358053)
Mao Mao An (603576)
Yuan Ying Jiang (603577)

May 2015

(A) For each rectangular shape, red shapes indicate down-regulated proteins, while green shapes i...

KEGG pathway analysis for significantly differentially expressed genes (A) between SS2-infected A/J and control A/J mice and (B) between SS2-infected B6 and control B6 mice.

Jie Rong (181453)
Wei Zhang (405)
Xiaohui Wang (19899)
Hongjie Fan (167764)
Chengping Lu (167772)
Huochun Yao (181458)

February 2012

P value<0.05 and FDR<0.05 were used as thresholds to select significant KEGG pathways. LgP...

Pathway analysis.

Yukino Hatazawa (538351)
Miki Tadaishi (219200)
Yuta Nagaike (538352)
Akihito Morita (538353)
Yoshihiro Ogawa (15560)
Osamu Ezaki (219242)
Takako Takai-Igarashi (219197)
Yasuyuki Kitaura (538354)
Yoshiharu Shimomura (392025)
Yasutomi Kamei (219165)
Shinji Miura (219238)

March 2014

Compared with WT mice, 315 genes were found to be up-regulated in PGC-1α Tg mice by microarray an...

KEGG analysis of up- and down-regulated genes.

Xiaohan Chen (384089)
Digang Zeng (384083)
Xiuli Chen (384084)
Daxiang Xie (384085)
Yongzhen Zhao (384086)
Chunling Yang (384087)
Yongmei Li (227480)
Ning Ma (155058)
Ming Li (91180)
Qiong Yang (28822)
Zhenping Liao (384088)
Hui Wang (30400)

August 2013

The top 30 pathways are shown. The x axis shows pathways from KEGG classification and the y axis ...

KEGG signaling pathway analysis of significantly regulated hypothalamic proteins.

Wei-na Cong (125752)
Huan Cai (105610)
Rui Wang (52434)
Caitlin M. Daimon (105618)
Stuart Maudsley (48794)
Kerstin Raber (125758)
Fabio Canneva (125763)
Stephan von Hörsten (125769)
Bronwen Martin (48785)

October 2012

Proteins significantly regulated in tgHD rats compared to WT controls were used as input data for...

KEGG signalling pathways overrepresented by gene-protein pairs found to be significantly deregulated in high-dose samples in comparison to controls.

Anna Papiez (6166616)
Omid Azimzadeh (193552)
Tamara Azizova (3561572)
Maria Moseeva (6166619)
Natasa Anastasov (6166622)
Jan Smida (451744)
Soile Tapio (193566)
Joanna Polanska (398872)

December 2018

The pathways in the left column were obtained from the intersection of enriched pathways from signif...

Enriched KEGG Pathways for the lists of differentially expressed proteins in spleen leukocytes from 2 week and 4 week old NOD mice compared to two control strains.

Jian Wu (41301)
Dorothy N. Kakoola (129190)
Nataliya I. Lenchik (129192)
Dominic M. Desiderio (129194)
Dana R. Marshall (129196)
Ivan C. Gerling (129198)

October 2012

One-way ANOVA (p<0.05) of protein expression data followed by hierarchical clustering and protein...

Activated KEGG pathway networks of AD pathology for excitatory neurons identified by sc2MeNetDrug (mice cohort).

Jiarui Feng (3817189)
S. Peter Goedegebuure (10677620)
Amanda Zeng (17743401)
Ye Bi (129496)
Ting Wang (16292)
Philip Payne (237866)
Li Ding (16240)
David DeNardo (14879676)
William Hawkins (733806)
Ryan C. Fields (15127510)
Fuhai Li (203913)

January 2024

Activated KEGG pathway networks of AD pathology for excitatory neurons identified by sc2MeNetDrug (m...

KEGG pathways enriched for co-expressed mRNAs in Cytoscape network.

Maria Fernanda da Silva Lopes (14564171)
Juliana de Souza Felix (14564174)
Natália Francisco Scaramele (14564177)
Mariana Cordeiro Almeida (14564180)
Amanda de Oliveira Furlan (14564183)
Jéssica Antonini Troiano (14564186)
Flávia Regina Florêncio de Athayde (14564189)
Flávia Lombardi Lopes (6058841)

February 2023

KEGG pathway enrichment analysis was performed in gProfiler. The y-axis represents the KEGG pathways...

The significant pathway of protein processing in endoplasmic reticulum (p = 0.0329) for differential proteins and the differential protein level in Comparison 3.

Li Ping Li (603571)
Wei Liu (20030)
Hong Liu (50694)
Fang Zhu (185566)
Da Zhi Zhang (741315)
Hui Shen (66625)
Zheng Xu (162992)
Yun Peng Qi (741316)
Shi Qun Zhang (741317)
Si Min Chen (603573)
Li Juan He (603574)
Xin Ju Cao (741318)
Xin Huang (11077)
Jun Dong Zhang (603572)
Lan Yan (358053)
Mao Mao An (603576)
Yuan Ying Jiang (603577)

May 2015

(A) For each rectangular shape, red shapes indicate down-regulated proteins, while green shapes i...

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KEGG Pathway Analysis of Differentially Expressed Proteins.

Abstract

Extracted data

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