Distribution of numbers of SNPs per gene for 5,056 P. falciparum genes analyzed with a population sample of 65 Gambian clinical isolates.

Distribution of FC27 alleles of P. falciparum msp2 gene in isolates in northwest Ethiopia.

Hussein Mohammed (802682)
Moges Kassa (414771)
Ashenafi Assefa (776696)
Mekonnen Tadesse (3497966)
Amha Kebede (776697)

May 2017

Distribution of FC27 alleles of P. falciparum msp2 gene in isolates in northwest Et...

Image_1_Selection and Utility of Single Nucleotide Polymorphism Markers to Reveal Fine-Scale Population Structure in Human Malaria Parasite Plasmodium falciparum.JPEG

Eugenia Lo (430989)
Mariangela Bonizzoni (116429)
Elizabeth Hemming-Schroeder (3521906)
Anthony Ford (5791307)
Daniel A. Janies (70643)
Anthony A. James (102253)
Yaw Afrane (137528)
Harrisone Etemesi (5791310)
Guofa Zhou (34790)
Andrew Githeko (137539)
Guiyun Yan (137540)

September 2018

Single nucleotide polymorphisms (SNPs) have been shown to be useful in revealing population structur...

Genome-wide analysis of selection on the malaria parasite Plasmodium falciparum in West African populations of differing infection endemicity.

Mobegi, VA
Duffy, CW
Amambua-Ngwa, A
Loua, KM
Laman, E
Nwakanma, DC
MacInnis, B
Aspeling-Jones, H
Murray, L
Clark, TG
Kwiatkowski, Dominic
Conway, DJ

June 2014

Locally varying selection on pathogens may be due to differences in drug pressure, host immunity, tr...

25 genes with ≥10 SNPs showing highest values of Tajima's D index in a genome-wide analysis of sequences of 65 Gambian P. falciparum isolates.

Alfred Amambua-Ngwa (122336)
Kevin K. A. Tetteh (122339)
Magnus Manske (106245)
Natalia Gomez-Escobar (7831)
Lindsay B. Stewart (122346)
M. Elizabeth Deerhake (122351)
Ian H. Cheeseman (122358)
Christopher I. Newbold (122364)
Anthony A. Holder (53358)
Ellen Knuepfer (122373)
Omar Janha (122379)
Muminatou Jallow (35062)
Susana Campino (56411)
Bronwyn MacInnis (106262)
Dominic P. Kwiatkowski (106264)
David J. Conway (34880)

November 2012

N, number of aligned nucleotide positions analysed; % CDS, percentage of the complete gene coding...

Tajima's and Fu & Li's summary indices of nucleotide site frequency spectrum for each of 2,853 P. falciparum genes with 3 or more SNPs in the Gambian population.

Alfred Amambua-Ngwa (122336)
Kevin K. A. Tetteh (122339)
Magnus Manske (106245)
Natalia Gomez-Escobar (7831)
Lindsay B. Stewart (122346)
M. Elizabeth Deerhake (122351)
Ian H. Cheeseman (122358)
Christopher I. Newbold (122364)
Anthony A. Holder (53358)
Ellen Knuepfer (122373)
Omar Janha (122379)
Muminatou Jallow (35062)
Susana Campino (56411)
Bronwyn MacInnis (106262)
Dominic P. Kwiatkowski (106264)
David J. Conway (34880)

November 2012

A. Frequency distribution histograms for the individual gene values for Tajima's D, Fu & Li's F* ...

Transcript profiles of the six msp3-like genes in P. falciparum clinical and laboratory isolates grown to schizont stages.

Alfred Amambua-Ngwa (122336)
Kevin K. A. Tetteh (122339)
Magnus Manske (106245)
Natalia Gomez-Escobar (7831)
Lindsay B. Stewart (122346)
M. Elizabeth Deerhake (122351)
Ian H. Cheeseman (122358)
Christopher I. Newbold (122364)
Anthony A. Holder (53358)
Ellen Knuepfer (122373)
Omar Janha (122379)
Muminatou Jallow (35062)
Susana Campino (56411)
Bronwyn MacInnis (106262)
Dominic P. Kwiatkowski (106264)
David J. Conway (34880)

November 2012

(A) Genomic loci of the six msp3-like genes on parasite chromosome 10 (nomenclature and ma...

Table_2_Selection and Utility of Single Nucleotide Polymorphism Markers to Reveal Fine-Scale Population Structure in Human Malaria Parasite Plasmodium falciparum.XLSX

Eugenia Lo (430989)
Mariangela Bonizzoni (116429)
Elizabeth Hemming-Schroeder (3521906)
Anthony Ford (5791307)
Daniel A. Janies (70643)
Anthony A. James (102253)
Yaw Afrane (137528)
Harrisone Etemesi (5791310)
Guofa Zhou (34790)
Andrew Githeko (137539)
Guiyun Yan (137540)

September 2018

Single nucleotide polymorphisms (SNPs) have been shown to be useful in revealing population structur...

Table_3_Selection and Utility of Single Nucleotide Polymorphism Markers to Reveal Fine-Scale Population Structure in Human Malaria Parasite Plasmodium falciparum.XLSX

Eugenia Lo (430989)
Mariangela Bonizzoni (116429)
Elizabeth Hemming-Schroeder (3521906)
Anthony Ford (5791307)
Daniel A. Janies (70643)
Anthony A. James (102253)
Yaw Afrane (137528)
Harrisone Etemesi (5791310)
Guofa Zhou (34790)
Andrew Githeko (137539)
Guiyun Yan (137540)

September 2018

Single nucleotide polymorphisms (SNPs) have been shown to be useful in revealing population structur...

Distribution of 3D7/IC alleles of P. falciparum msp2 gene isolates in northwest Ethiopia.

Hussein Mohammed (802682)
Moges Kassa (414771)
Ashenafi Assefa (776696)
Mekonnen Tadesse (3497966)
Amha Kebede (776697)

May 2017

Distribution of 3D7/IC alleles of P. falciparum msp2 gene isolates in northwest Eth...

Distribution of Tajima's D values across all 14 chromosomes for each of the 2,853 P. falciparum genes with 3 or more SNPs in the Gambian population.

Alfred Amambua-Ngwa (122336)
Kevin K. A. Tetteh (122339)
Magnus Manske (106245)
Natalia Gomez-Escobar (7831)
Lindsay B. Stewart (122346)
M. Elizabeth Deerhake (122351)
Ian H. Cheeseman (122358)
Christopher I. Newbold (122364)
Anthony A. Holder (53358)
Ellen Knuepfer (122373)
Omar Janha (122379)
Muminatou Jallow (35062)
Susana Campino (56411)
Bronwyn MacInnis (106262)
Dominic P. Kwiatkowski (106264)
David J. Conway (34880)

November 2012

A. All values for individual genes are plotted as individual points positioned according to the o...

A rticle Genome-Wide Analysis of Selection on the Malaria Parasite Plasmodium falciparum inWest African Populations of Differing

Infection Endemicity
Victor A. Mobegi
Craig W. Duffy
Alfred Amambua-ngwa
Kovana M. Loua
Eugene Laman
Dominic P. Kwiatkowski
David J. Conway

August 2016

Locally varying selection on pathogens may be due to differences in drug pressure, host immunity, tr...

Data from: SNP genotyping identifies new signatures of selection in a deep sample of West African P. falciparum malaria parasites

Amambua-Ngwa, Alfred
Park, Daniel J.
Volkman, Sarah K.
Barnes, Kayla G.
Bei, Amy
Lukens, Amanda K.
Sene, Papa
Van Tyne, Daria
Ndiaye, Daouda
Wirth, Dyann F.
Conway, David J.
Neafsey, Daniel E.
Schaffner, Stephen F.

June 2012

We used a high density SNP array to genotype 75 P. falciparum isolates recently collected from Seneg...

Image_3_Selection and Utility of Single Nucleotide Polymorphism Markers to Reveal Fine-Scale Population Structure in Human Malaria Parasite Plasmodium falciparum.JPEG

Eugenia Lo (430989)
Mariangela Bonizzoni (116429)
Elizabeth Hemming-Schroeder (3521906)
Anthony Ford (5791307)
Daniel A. Janies (70643)
Anthony A. James (102253)
Yaw Afrane (137528)
Harrisone Etemesi (5791310)
Guofa Zhou (34790)
Andrew Githeko (137539)
Guiyun Yan (137540)

September 2018

Single nucleotide polymorphisms (SNPs) have been shown to be useful in revealing population structur...

Selection and Utility of Single Nucleotide Polymorphism Markers to Reveal Fine-Scale Population Structure in Human Malaria Parasite Plasmodium falciparum

Lo, E
Bonizzoni, M
Hemming-Schroeder, E
Ford, A
Janies, DA
James, AA
Afrane, Y
Etemesi, H
Zhou, G
Githeko, A
Yan, G

September 2018

Single nucleotide polymorphisms (SNPs) have been shown to be useful in revealing population structur...

Image_2_Selection and Utility of Single Nucleotide Polymorphism Markers to Reveal Fine-Scale Population Structure in Human Malaria Parasite Plasmodium falciparum.JPEG

Eugenia Lo (430989)
Mariangela Bonizzoni (116429)
Elizabeth Hemming-Schroeder (3521906)
Anthony Ford (5791307)
Daniel A. Janies (70643)
Anthony A. James (102253)
Yaw Afrane (137528)
Harrisone Etemesi (5791310)
Guofa Zhou (34790)
Andrew Githeko (137539)
Guiyun Yan (137540)

September 2018

Single nucleotide polymorphisms (SNPs) have been shown to be useful in revealing population structur...

Distribution of FC27 alleles of P. falciparum msp2 gene in isolates in northwest Ethiopia.

Hussein Mohammed (802682)
Moges Kassa (414771)
Ashenafi Assefa (776696)
Mekonnen Tadesse (3497966)
Amha Kebede (776697)

May 2017

Distribution of FC27 alleles of P. falciparum msp2 gene in isolates in northwest Et...

Image_1_Selection and Utility of Single Nucleotide Polymorphism Markers to Reveal Fine-Scale Population Structure in Human Malaria Parasite Plasmodium falciparum.JPEG

Eugenia Lo (430989)
Mariangela Bonizzoni (116429)
Elizabeth Hemming-Schroeder (3521906)
Anthony Ford (5791307)
Daniel A. Janies (70643)
Anthony A. James (102253)
Yaw Afrane (137528)
Harrisone Etemesi (5791310)
Guofa Zhou (34790)
Andrew Githeko (137539)
Guiyun Yan (137540)

September 2018

Single nucleotide polymorphisms (SNPs) have been shown to be useful in revealing population structur...

Genome-wide analysis of selection on the malaria parasite Plasmodium falciparum in West African populations of differing infection endemicity.

Mobegi, VA
Duffy, CW
Amambua-Ngwa, A
Loua, KM
Laman, E
Nwakanma, DC
MacInnis, B
Aspeling-Jones, H
Murray, L
Clark, TG
Kwiatkowski, Dominic
Conway, DJ

June 2014

Locally varying selection on pathogens may be due to differences in drug pressure, host immunity, tr...

25 genes with ≥10 SNPs showing highest values of Tajima's D index in a genome-wide analysis of sequences of 65 Gambian P. falciparum isolates.

Alfred Amambua-Ngwa (122336)
Kevin K. A. Tetteh (122339)
Magnus Manske (106245)
Natalia Gomez-Escobar (7831)
Lindsay B. Stewart (122346)
M. Elizabeth Deerhake (122351)
Ian H. Cheeseman (122358)
Christopher I. Newbold (122364)
Anthony A. Holder (53358)
Ellen Knuepfer (122373)
Omar Janha (122379)
Muminatou Jallow (35062)
Susana Campino (56411)
Bronwyn MacInnis (106262)
Dominic P. Kwiatkowski (106264)
David J. Conway (34880)

November 2012

N, number of aligned nucleotide positions analysed; % CDS, percentage of the complete gene coding...

Tajima's and Fu & Li's summary indices of nucleotide site frequency spectrum for each of 2,853 P. falciparum genes with 3 or more SNPs in the Gambian population.

Alfred Amambua-Ngwa (122336)
Kevin K. A. Tetteh (122339)
Magnus Manske (106245)
Natalia Gomez-Escobar (7831)
Lindsay B. Stewart (122346)
M. Elizabeth Deerhake (122351)
Ian H. Cheeseman (122358)
Christopher I. Newbold (122364)
Anthony A. Holder (53358)
Ellen Knuepfer (122373)
Omar Janha (122379)
Muminatou Jallow (35062)
Susana Campino (56411)
Bronwyn MacInnis (106262)
Dominic P. Kwiatkowski (106264)
David J. Conway (34880)

November 2012

A. Frequency distribution histograms for the individual gene values for Tajima's D, Fu & Li's F* ...

Transcript profiles of the six msp3-like genes in P. falciparum clinical and laboratory isolates grown to schizont stages.

Alfred Amambua-Ngwa (122336)
Kevin K. A. Tetteh (122339)
Magnus Manske (106245)
Natalia Gomez-Escobar (7831)
Lindsay B. Stewart (122346)
M. Elizabeth Deerhake (122351)
Ian H. Cheeseman (122358)
Christopher I. Newbold (122364)
Anthony A. Holder (53358)
Ellen Knuepfer (122373)
Omar Janha (122379)
Muminatou Jallow (35062)
Susana Campino (56411)
Bronwyn MacInnis (106262)
Dominic P. Kwiatkowski (106264)
David J. Conway (34880)

November 2012

(A) Genomic loci of the six msp3-like genes on parasite chromosome 10 (nomenclature and ma...

Table_2_Selection and Utility of Single Nucleotide Polymorphism Markers to Reveal Fine-Scale Population Structure in Human Malaria Parasite Plasmodium falciparum.XLSX

Eugenia Lo (430989)
Mariangela Bonizzoni (116429)
Elizabeth Hemming-Schroeder (3521906)
Anthony Ford (5791307)
Daniel A. Janies (70643)
Anthony A. James (102253)
Yaw Afrane (137528)
Harrisone Etemesi (5791310)
Guofa Zhou (34790)
Andrew Githeko (137539)
Guiyun Yan (137540)

September 2018

Single nucleotide polymorphisms (SNPs) have been shown to be useful in revealing population structur...

Table_3_Selection and Utility of Single Nucleotide Polymorphism Markers to Reveal Fine-Scale Population Structure in Human Malaria Parasite Plasmodium falciparum.XLSX

Eugenia Lo (430989)
Mariangela Bonizzoni (116429)
Elizabeth Hemming-Schroeder (3521906)
Anthony Ford (5791307)
Daniel A. Janies (70643)
Anthony A. James (102253)
Yaw Afrane (137528)
Harrisone Etemesi (5791310)
Guofa Zhou (34790)
Andrew Githeko (137539)
Guiyun Yan (137540)

September 2018

Single nucleotide polymorphisms (SNPs) have been shown to be useful in revealing population structur...

Distribution of 3D7/IC alleles of P. falciparum msp2 gene isolates in northwest Ethiopia.

Hussein Mohammed (802682)
Moges Kassa (414771)
Ashenafi Assefa (776696)
Mekonnen Tadesse (3497966)
Amha Kebede (776697)

May 2017

Distribution of 3D7/IC alleles of P. falciparum msp2 gene isolates in northwest Eth...

Distribution of Tajima's D values across all 14 chromosomes for each of the 2,853 P. falciparum genes with 3 or more SNPs in the Gambian population.

Alfred Amambua-Ngwa (122336)
Kevin K. A. Tetteh (122339)
Magnus Manske (106245)
Natalia Gomez-Escobar (7831)
Lindsay B. Stewart (122346)
M. Elizabeth Deerhake (122351)
Ian H. Cheeseman (122358)
Christopher I. Newbold (122364)
Anthony A. Holder (53358)
Ellen Knuepfer (122373)
Omar Janha (122379)
Muminatou Jallow (35062)
Susana Campino (56411)
Bronwyn MacInnis (106262)
Dominic P. Kwiatkowski (106264)
David J. Conway (34880)

November 2012

A. All values for individual genes are plotted as individual points positioned according to the o...

A rticle Genome-Wide Analysis of Selection on the Malaria Parasite Plasmodium falciparum inWest African Populations of Differing

Infection Endemicity
Victor A. Mobegi
Craig W. Duffy
Alfred Amambua-ngwa
Kovana M. Loua
Eugene Laman
Dominic P. Kwiatkowski
David J. Conway

August 2016

Locally varying selection on pathogens may be due to differences in drug pressure, host immunity, tr...

Data from: SNP genotyping identifies new signatures of selection in a deep sample of West African P. falciparum malaria parasites

Amambua-Ngwa, Alfred
Park, Daniel J.
Volkman, Sarah K.
Barnes, Kayla G.
Bei, Amy
Lukens, Amanda K.
Sene, Papa
Van Tyne, Daria
Ndiaye, Daouda
Wirth, Dyann F.
Conway, David J.
Neafsey, Daniel E.
Schaffner, Stephen F.

June 2012

We used a high density SNP array to genotype 75 P. falciparum isolates recently collected from Seneg...

Image_3_Selection and Utility of Single Nucleotide Polymorphism Markers to Reveal Fine-Scale Population Structure in Human Malaria Parasite Plasmodium falciparum.JPEG

Eugenia Lo (430989)
Mariangela Bonizzoni (116429)
Elizabeth Hemming-Schroeder (3521906)
Anthony Ford (5791307)
Daniel A. Janies (70643)
Anthony A. James (102253)
Yaw Afrane (137528)
Harrisone Etemesi (5791310)
Guofa Zhou (34790)
Andrew Githeko (137539)
Guiyun Yan (137540)

September 2018

Single nucleotide polymorphisms (SNPs) have been shown to be useful in revealing population structur...

Selection and Utility of Single Nucleotide Polymorphism Markers to Reveal Fine-Scale Population Structure in Human Malaria Parasite Plasmodium falciparum

Lo, E
Bonizzoni, M
Hemming-Schroeder, E
Ford, A
Janies, DA
James, AA
Afrane, Y
Etemesi, H
Zhou, G
Githeko, A
Yan, G

September 2018

Single nucleotide polymorphisms (SNPs) have been shown to be useful in revealing population structur...

Image_2_Selection and Utility of Single Nucleotide Polymorphism Markers to Reveal Fine-Scale Population Structure in Human Malaria Parasite Plasmodium falciparum.JPEG

Eugenia Lo (430989)
Mariangela Bonizzoni (116429)
Elizabeth Hemming-Schroeder (3521906)
Anthony Ford (5791307)
Daniel A. Janies (70643)
Anthony A. James (102253)
Yaw Afrane (137528)
Harrisone Etemesi (5791310)
Guofa Zhou (34790)
Andrew Githeko (137539)
Guiyun Yan (137540)

September 2018

Single nucleotide polymorphisms (SNPs) have been shown to be useful in revealing population structur...

Distribution of FC27 alleles of P. falciparum msp2 gene in isolates in northwest Ethiopia.

Hussein Mohammed (802682)
Moges Kassa (414771)
Ashenafi Assefa (776696)
Mekonnen Tadesse (3497966)
Amha Kebede (776697)

May 2017

Distribution of FC27 alleles of P. falciparum msp2 gene in isolates in northwest Et...

Image_1_Selection and Utility of Single Nucleotide Polymorphism Markers to Reveal Fine-Scale Population Structure in Human Malaria Parasite Plasmodium falciparum.JPEG

Eugenia Lo (430989)
Mariangela Bonizzoni (116429)
Elizabeth Hemming-Schroeder (3521906)
Anthony Ford (5791307)
Daniel A. Janies (70643)
Anthony A. James (102253)
Yaw Afrane (137528)
Harrisone Etemesi (5791310)
Guofa Zhou (34790)
Andrew Githeko (137539)
Guiyun Yan (137540)

September 2018

Single nucleotide polymorphisms (SNPs) have been shown to be useful in revealing population structur...

Genome-wide analysis of selection on the malaria parasite Plasmodium falciparum in West African populations of differing infection endemicity.

Mobegi, VA
Duffy, CW
Amambua-Ngwa, A
Loua, KM
Laman, E
Nwakanma, DC
MacInnis, B
Aspeling-Jones, H
Murray, L
Clark, TG
Kwiatkowski, Dominic
Conway, DJ

June 2014

Locally varying selection on pathogens may be due to differences in drug pressure, host immunity, tr...

Distribution of numbers of SNPs per gene for 5,056 <i>P. falciparum</i> genes analyzed with a population sample of 65 Gambian clinical isolates.

Abstract

Extracted data

Distribution of numbers of SNPs per gene for 5,056 <i>P. falciparum</i> genes analyzed with a population sample of 65 Gambian clinical isolates.

Abstract

Extracted data

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