Functional categories enriched among down-regulated proteins.

Protein import into yeast microbodies.

Waterham, Hans Rudolf,

January 1994

A main characteristic of the eukaryotic cell is the compartmentalization of different metabolic proc...

Functional category and protein abundance distribution analyses.

Songyue Yin (135511)
Jin Xue (29409)
Haidan Sun (458026)
Bo Wen (207648)
Quanhui Wang (129172)
Guy Perkins (78212)
Huiwen W. Zhao (245062)
Mark H. Ellisman (111605)
Yu-hsin Hsiao (135508)
Liang Yin (458027)
Yingying Xie (424408)
Guixue Hou (458028)
Jin Zi (458029)
Liang Lin (6487)
Gabriel G. Haddad (29414)
Dan Zhou (29408)
Siqi Liu (6569)

September 2013

(A and B) The distribution of proteins with differential expression in LOF or HOF across function...

Functional distribution of identified proteins.

Linda Bianco (102134)
Fiammetta Alagna (102142)
Luciana Baldoni (102151)
Christine Finnie (102158)
Birte Svensson (102167)
Gaetano Perrotta (102176)

January 2013

The proteins showing a statistically significant change were manually sorted into 15 functional c...

Functional categories enriched among up-regulated proteins.

Johan O. Westman (121015)
Mohammad J. Taherzadeh (121017)
Carl Johan Franzén (121020)

November 2012

Enriched (p<0.01) functional categories among up-regulated proteins in encapsulated yeast, as ana...

Statistically enriched MIPS functions.

Lívia do Carmo Silva (761560)
Diana Patrícia Tamayo Ossa (761561)
Symone Vitoriano da Conceição Castro (761562)
Ludmila Bringel Pires (761563)
Cecília Maria Alves de Oliveira (585173)
Cleuza Conceição da Silva (761564)
Narcimário Pereira Coelho (761565)
Alexandre Melo Bailão (111537)
Juliana Alves Parente-Rocha (761566)
Célia Maria de Almeida Soares (111538)
Orville Hernández Ruiz (341223)
Juan G. McEwen Ochoa (761567)
Maristela Pereira (69869)

June 2015

(A) Total ESTs represented by classified and unclassified categories. (B) Genes exp...

FunCat functional main categories in DE genes and their number summarized over all days.

Vanessa Reininger (144064)
Markus Schlegel (2556715)

March 2016

FunCat functional main categories in DE genes and their number summarized over all days.</p

Enriched biological processes in spore-enriched or yeast-enriched proteins.

Mingwei Huang (788799)
Alexander S. Hebert (788800)
Joshua J. Coon (388014)
Christina M. Hull (366731)

August 2015

Spore-enriched proteins were defined as those identified only in spores but not in yeast in our d...

Functional organization of the yeast proteome by systematic analysis of protein complexes

Gavin, A.C.
Boesche, M.
Krause, R.
Grandi, P.
Marzioch, M.
Bauer, A.
Schultz, J.
Rick, J.M.
Michon, A.M.
Cruciat, C.M.
Remor, M.
Hoefert, C.
Schelder, M.
Brajenovic, M.
Ruffner, H.
Merino, A.
Klein, K.
Hudak, M.
Dickson, D.
Rudi, T.
Gnau, V.
Bauch, A.
Bastuck, S.
Huhse, B.
Leutwein, C.
Heurtier, M.A.
Copley, R.R.
Edelmann, A.
Querfurth, E.
Rybin, V.
Drewes, G.
Raida, M.
Bouwmeester, T.
Bork, P.
Seraphin, B.
Kuester, B.
Neubauer, G.
Superti-Furga, G.

January 2002

Most cellular processes are carried out by multiprotein complexes. The identification and analysis o...

Functional organization of the yeast proteome by systematic analysis of protein complexes.

Gavin, Anne-Claude
Bosche, Markus
Krause, Roland
Grandi, Paola
Marzioch, Martina
Bauer, Andreas
Schultz, Jorg
Rick, Jens M.
Michon, Anne-Marie
Cruciat, Cristina-Maria
Remor, Marita
Hofert, Christian
Schelder, Malgorzata
Brajenovic, Miro
Ruffner, Heinz
Merino, Alejandro
Klein, Karin
Hudak, Manuela
Dickson, David
Rudi, Tatjana
Gnau, Volker
Bauch, Angela
Bastuck, Sonja
Huhse, Bettina
Leutwein, Christina
Heurtier, Marie-Anne
Copley, Richard R.
Edelmann, Angela
Querfurth, Erich
Rybin, Vladimir
Drewes, Gerard
Raida, Manfred
Bouwmeester, Tewis
Bork, Peer
Seraphin, Bertrand
Kuster, Bernhard
Neubauer, Gitte
Superti-Furga, Giulio

January 2002

peer reviewedMost cellular processes are carried out by multiprotein complexes. The identification a...

The most enriched categories of modular enrichment in each gene clusters uncovered by K-means clustering from yeast dataset.

Yan Cui (9885)
Chun-Hou Zheng (283529)
Jian Yang (12136)

March 2013

The columns of the table summarize the total sizes of the cluster (numbers in parentheses), the n...

Proteome survey reveals modularity of the yeast cell machinery

Gavin, A.C.
Aloy, P.
Grandi, P.
Krause, R.
Boesche, M.
Marzioch, M.
Rau, C.
Jensen, L.J.
Bastuck, S.
Duempelfeld, B.
Edelmann, A.
Heurtier, M.A.
Hoffman, V.
Hoefert, C.
Klein, K.
Hudak, M.
Michon, A.M.
Schelder, M.
Schirle, M.
Remor, M.
Rudi, T.
Hooper, S.
Bauer, A.
Bouwmeester, T.
Casari, G.
Drewes, G.
Neubauer, G.
Rick, J.M.
Kuster, B.
Bork, P.
Russell, R.B.
Superti-Furga, G.

March 2006

Protein complexes are key molecular entities that integrate multiple gene products to perform cellul...

Global organization of protein complexome in the yeast Saccharomyces cerevisiae

Lee, Sang Hoon
Kim, Pan-Jun
Jeong, Hawoong

January 2011

Background: Proteins in organisms, rather than act alone, usually form protein complexes to perform ...

Functional categories of differentially expressed genes in the presence of WIS in medium containing acetic acid, based on MIPS indices of biological functions.

Rakesh Koppram (2153662)
Valeria Mapelli (156528)
Eva Albers (1377216)
Lisbeth Olsson (87404)

February 2016

The numbers of proteins in each category relative to the total number of differentially expressed...

Functional classification of up and down-regulated genes from P. lutzii yeast cells in the presence TSC-C.

Lívia do Carmo Silva (761560)
Diana Patrícia Tamayo Ossa (761561)
Symone Vitoriano da Conceição Castro (761562)
Ludmila Bringel Pires (761563)
Cecília Maria Alves de Oliveira (585173)
Cleuza Conceição da Silva (761564)
Narcimário Pereira Coelho (761565)
Alexandre Melo Bailão (111537)
Juliana Alves Parente-Rocha (761566)
Célia Maria de Almeida Soares (111538)
Orville Hernández Ruiz (341223)
Juan G. McEwen Ochoa (761567)
Maristela Pereira (69869)

June 2015

Genes in bold correspond to single genes in condition TSC-C. The signs + and - represent induced ...

Singular enrichment of GO (or KEGG) categories in gene clusters uncovered by LRR from yeast dataset.

Yan Cui (9885)
Chun-Hou Zheng (283529)
Jian Yang (12136)

March 2013

Only significantly enriched functional categories (corrected P-value<10−20) are...

Protein import into yeast microbodies.

Waterham, Hans Rudolf,

January 1994

A main characteristic of the eukaryotic cell is the compartmentalization of different metabolic proc...

Functional category and protein abundance distribution analyses.

Songyue Yin (135511)
Jin Xue (29409)
Haidan Sun (458026)
Bo Wen (207648)
Quanhui Wang (129172)
Guy Perkins (78212)
Huiwen W. Zhao (245062)
Mark H. Ellisman (111605)
Yu-hsin Hsiao (135508)
Liang Yin (458027)
Yingying Xie (424408)
Guixue Hou (458028)
Jin Zi (458029)
Liang Lin (6487)
Gabriel G. Haddad (29414)
Dan Zhou (29408)
Siqi Liu (6569)

September 2013

(A and B) The distribution of proteins with differential expression in LOF or HOF across function...

Functional distribution of identified proteins.

Linda Bianco (102134)
Fiammetta Alagna (102142)
Luciana Baldoni (102151)
Christine Finnie (102158)
Birte Svensson (102167)
Gaetano Perrotta (102176)

January 2013

The proteins showing a statistically significant change were manually sorted into 15 functional c...

Functional categories enriched among up-regulated proteins.

Johan O. Westman (121015)
Mohammad J. Taherzadeh (121017)
Carl Johan Franzén (121020)

November 2012

Enriched (p<0.01) functional categories among up-regulated proteins in encapsulated yeast, as ana...

Statistically enriched MIPS functions.

Lívia do Carmo Silva (761560)
Diana Patrícia Tamayo Ossa (761561)
Symone Vitoriano da Conceição Castro (761562)
Ludmila Bringel Pires (761563)
Cecília Maria Alves de Oliveira (585173)
Cleuza Conceição da Silva (761564)
Narcimário Pereira Coelho (761565)
Alexandre Melo Bailão (111537)
Juliana Alves Parente-Rocha (761566)
Célia Maria de Almeida Soares (111538)
Orville Hernández Ruiz (341223)
Juan G. McEwen Ochoa (761567)
Maristela Pereira (69869)

June 2015

(A) Total ESTs represented by classified and unclassified categories. (B) Genes exp...

FunCat functional main categories in DE genes and their number summarized over all days.

Vanessa Reininger (144064)
Markus Schlegel (2556715)

March 2016

FunCat functional main categories in DE genes and their number summarized over all days.</p

Enriched biological processes in spore-enriched or yeast-enriched proteins.

Mingwei Huang (788799)
Alexander S. Hebert (788800)
Joshua J. Coon (388014)
Christina M. Hull (366731)

August 2015

Spore-enriched proteins were defined as those identified only in spores but not in yeast in our d...

Functional organization of the yeast proteome by systematic analysis of protein complexes

Gavin, A.C.
Boesche, M.
Krause, R.
Grandi, P.
Marzioch, M.
Bauer, A.
Schultz, J.
Rick, J.M.
Michon, A.M.
Cruciat, C.M.
Remor, M.
Hoefert, C.
Schelder, M.
Brajenovic, M.
Ruffner, H.
Merino, A.
Klein, K.
Hudak, M.
Dickson, D.
Rudi, T.
Gnau, V.
Bauch, A.
Bastuck, S.
Huhse, B.
Leutwein, C.
Heurtier, M.A.
Copley, R.R.
Edelmann, A.
Querfurth, E.
Rybin, V.
Drewes, G.
Raida, M.
Bouwmeester, T.
Bork, P.
Seraphin, B.
Kuester, B.
Neubauer, G.
Superti-Furga, G.

January 2002

Most cellular processes are carried out by multiprotein complexes. The identification and analysis o...

Functional organization of the yeast proteome by systematic analysis of protein complexes.

Gavin, Anne-Claude
Bosche, Markus
Krause, Roland
Grandi, Paola
Marzioch, Martina
Bauer, Andreas
Schultz, Jorg
Rick, Jens M.
Michon, Anne-Marie
Cruciat, Cristina-Maria
Remor, Marita
Hofert, Christian
Schelder, Malgorzata
Brajenovic, Miro
Ruffner, Heinz
Merino, Alejandro
Klein, Karin
Hudak, Manuela
Dickson, David
Rudi, Tatjana
Gnau, Volker
Bauch, Angela
Bastuck, Sonja
Huhse, Bettina
Leutwein, Christina
Heurtier, Marie-Anne
Copley, Richard R.
Edelmann, Angela
Querfurth, Erich
Rybin, Vladimir
Drewes, Gerard
Raida, Manfred
Bouwmeester, Tewis
Bork, Peer
Seraphin, Bertrand
Kuster, Bernhard
Neubauer, Gitte
Superti-Furga, Giulio

January 2002

peer reviewedMost cellular processes are carried out by multiprotein complexes. The identification a...

The most enriched categories of modular enrichment in each gene clusters uncovered by K-means clustering from yeast dataset.

Yan Cui (9885)
Chun-Hou Zheng (283529)
Jian Yang (12136)

March 2013

The columns of the table summarize the total sizes of the cluster (numbers in parentheses), the n...

Proteome survey reveals modularity of the yeast cell machinery

Gavin, A.C.
Aloy, P.
Grandi, P.
Krause, R.
Boesche, M.
Marzioch, M.
Rau, C.
Jensen, L.J.
Bastuck, S.
Duempelfeld, B.
Edelmann, A.
Heurtier, M.A.
Hoffman, V.
Hoefert, C.
Klein, K.
Hudak, M.
Michon, A.M.
Schelder, M.
Schirle, M.
Remor, M.
Rudi, T.
Hooper, S.
Bauer, A.
Bouwmeester, T.
Casari, G.
Drewes, G.
Neubauer, G.
Rick, J.M.
Kuster, B.
Bork, P.
Russell, R.B.
Superti-Furga, G.

March 2006

Protein complexes are key molecular entities that integrate multiple gene products to perform cellul...

Global organization of protein complexome in the yeast Saccharomyces cerevisiae

Lee, Sang Hoon
Kim, Pan-Jun
Jeong, Hawoong

January 2011

Background: Proteins in organisms, rather than act alone, usually form protein complexes to perform ...

Functional categories of differentially expressed genes in the presence of WIS in medium containing acetic acid, based on MIPS indices of biological functions.

Rakesh Koppram (2153662)
Valeria Mapelli (156528)
Eva Albers (1377216)
Lisbeth Olsson (87404)

February 2016

The numbers of proteins in each category relative to the total number of differentially expressed...

Functional classification of up and down-regulated genes from P. lutzii yeast cells in the presence TSC-C.

Lívia do Carmo Silva (761560)
Diana Patrícia Tamayo Ossa (761561)
Symone Vitoriano da Conceição Castro (761562)
Ludmila Bringel Pires (761563)
Cecília Maria Alves de Oliveira (585173)
Cleuza Conceição da Silva (761564)
Narcimário Pereira Coelho (761565)
Alexandre Melo Bailão (111537)
Juliana Alves Parente-Rocha (761566)
Célia Maria de Almeida Soares (111538)
Orville Hernández Ruiz (341223)
Juan G. McEwen Ochoa (761567)
Maristela Pereira (69869)

June 2015

Genes in bold correspond to single genes in condition TSC-C. The signs + and - represent induced ...

Singular enrichment of GO (or KEGG) categories in gene clusters uncovered by LRR from yeast dataset.

Yan Cui (9885)
Chun-Hou Zheng (283529)
Jian Yang (12136)

March 2013

Only significantly enriched functional categories (corrected P-value<10−20) are...

Protein import into yeast microbodies.

Waterham, Hans Rudolf,

January 1994

A main characteristic of the eukaryotic cell is the compartmentalization of different metabolic proc...

Functional category and protein abundance distribution analyses.

Songyue Yin (135511)
Jin Xue (29409)
Haidan Sun (458026)
Bo Wen (207648)
Quanhui Wang (129172)
Guy Perkins (78212)
Huiwen W. Zhao (245062)
Mark H. Ellisman (111605)
Yu-hsin Hsiao (135508)
Liang Yin (458027)
Yingying Xie (424408)
Guixue Hou (458028)
Jin Zi (458029)
Liang Lin (6487)
Gabriel G. Haddad (29414)
Dan Zhou (29408)
Siqi Liu (6569)

September 2013

(A and B) The distribution of proteins with differential expression in LOF or HOF across function...

Functional distribution of identified proteins.

Linda Bianco (102134)
Fiammetta Alagna (102142)
Luciana Baldoni (102151)
Christine Finnie (102158)
Birte Svensson (102167)
Gaetano Perrotta (102176)

January 2013

The proteins showing a statistically significant change were manually sorted into 15 functional c...

Functional categories enriched among down-regulated proteins.

Abstract

Extracted data

Functional categories enriched among down-regulated proteins.

Abstract

Extracted data

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