Maximum likelihood phylogenetic tree based on rrs (16S rRNA) gene sequences (1348 nt) showing the position of strains isolated from Dimorphandra wilsonii nodules within the genus Bradyrhizobium.

Phylogenetic tree constructed by maximum likelihood analysis based on the combined gene sequences of the nearly entire SSU rRNA and D1/D2 domain of LSU rRNA depicting the placement of Hemisphaericaspora nanyangensis sp. nov. and representative neighbouring taxa in the family Debaryomycetaceae [2], [12], [30].

Fengli Hui (539431)
Yongcheng Ren (539430)
Liang Chen (73736)
Ying Li (38224)
Lin Zhang (8926)
Qiuhong Niu (468931)

July 2014

Bootstrap values above 50% are given at nodes based on 1,000 replications. The sequence accession...

16S rRNA gene phylogenetic tree of bacterial strains isolated from New Zealand native legumes and selected Mesorhizobium type strains.

Heng Wee Tan (300712)
Bevan S. Weir (300713)
Noel Carter (300715)
Peter B. Heenan (300716)
Hayley J. Ridgway (300717)
Euan K. James (117985)
Janet I. Sprent (117981)
J. Peter W. Young (50249)
Mitchell Andrews (300718)

February 2013

Ca = Carmichaelia australis; Cm = Carmichaelia monroi; Cn = Carmichaelia nana</i...

Phylogenetic analysis of the 16S rDNA sequences of isolated bacterial strains.

Chien-Yi Chang (233503)
Chong-Lek Koh (309437)
Choon-Kook Sam (309438)
Xin-Yue Chan (309439)
Wai Fong Yin (309440)
Kok Gan Chan (309442)

February 2013

The tree is based on maximum-likelihood (Tamura-Nei model) analysis. Bootstrap values (expressed ...

Phylogenetic trees depicting the phylogenetic position of Ochrobactrum sp. A44T strain among other members of the Ochrobactrum genus.

Dorota M. Krzyżanowska (6250874)
Tomasz Maciąg (6250877)
Adam Ossowicki (710510)
Magdalena Rajewska (6250880)
Zbigniew Kaczyński (227176)
Małgorzata Czerwicka (2242141)
Łukasz Rąbalski (6250883)
Paulina Czaplewska (4235953)
Sylwia Jafra (3878698)

January 2019

(A) Molecular phylogenetic analysis of partial (1335 bp) 16S rRNA gene sequences by the maximum like...

Phylogenetic tree based on ribosomal gene sequences of the bacteria isolated in this study and several related species.

Ameni Loulou (12822365)
Maristella Mastore (11720699)
Sara Caramella (14492953)
Aashaq Hussain Bhat (12458170)
Maurizio Francesco Brivio (11720702)
Ricardo A. R. Machado (10164653)
Sadreddine Kallel (12822377)

January 2023

Phylogenetic relationships based on 16S rRNA gene sequences were inferred by using the Maximum Likel...

Phylogenetic trees are shown and were conducted using the maximum-likelihood method.

Meng Xiao (591353)
Lu Pang (848408)
Sharon C-A. Chen (298938)
Xin Fan (445028)
Li Zhang (8200)
Hai-Xia Li (848409)
Xin Hou (336157)
Jing-Wei Cheng (836667)
Fanrong Kong (218191)
Yu-Pei Zhao (501310)
Ying-Chun Xu (647163)

January 2016

Fig 1a. Phylogenetic tree based on the concatenated gyrB-16S-secA1-hsp65<...

Phylogenetic analysis.

Jieni Lian (1807342)
Jinlyung Choi (1807339)
Yee Shiean Tan (1807345)
Adina Howe (1807348)
Zhiyou Wen (1807336)
Laura R. Jarboe (529248)

February 2016

A maximum likelihood reconstruction of the phylogenetic analysis of 16S rRNA genes of our isolate...

Maximum likelihood phylogenetic tree based on 16S rRNA gene sequences.

Jimmy H. W. Saw (475908)
Michael Schatz (475909)
Mark V. Brown (475910)
Dennis D. Kunkel (475911)
Jamie S. Foster (162153)
Harry Shick (475912)
Stephanie Christensen (475913)
Shaobin Hou (475914)
Xuehua Wan (475915)
Stuart P. Donachie (475916)

October 2013

Sequences were aligned using Muscle, edited with Gblocks, and the tree was inferred using RAxML p...

Maximum likelihood phylogenetic tree based on 16S rRNA gene sequences of bacteria and mitochondria of eukaryota.

Kazumasa Fukuda (409966)
Kazuhiro Yatera (409965)
Midori Ogawa (606680)
Toshinori Kawanami (409964)
Kei Yamasaki (409963)
Shingo Noguchi (409967)
Robert S. Murphy (606681)
Hiroshi Mukae (409973)
Hatsumi Taniguchi (409972)

July 2014

The phylogenetic tree was calculated with MEGA5.2.2 using the maximum likelihood method. The tree...

Evolutionary relationships of the selected strains.

Almudena Escobar-Niño (609768)
Carlos Luna (609769)
Diego Luna (434415)
Ana T. Marcos (609770)
David Cánovas (609771)
Encarnación Mellado (210526)

August 2014

Phylogenetic trees were inferred from the 16S rRNA sequences of the 23 Gram negative (A) and the ...

Multilocus sequence analysis of bradyrhizobia isolated from Aeschynomene species in Senegal

Nzoue, A.
Miche, L
Klonowska, A.
Laguerre, G.
Lajudie, P., De
Moulin, L.

January 2009

Adresse auteur: lionel.moulin@mpl.ird.frInternational audienceThis study reports the multilocus sequ...

Phylogenetically clustering of rhizobia by genome structure: Application to unclassified Rhizobium

Zheng, Jun-Fang
Liu, Gui-Rong
Liu, Shu-Lin

January 2006

Previous research reveals that the genome structures of rhizobial type strains and reference strains...

Multilocus sequence analysis of bradyrhizobia isolated from Aeschynomene species in Senegal.

Nzoué, A.
Miché, L.
Klonowska, A.
Laguerre, G.
de Lajudie, P.
Moulin, L.

September 2009

This study reports the multilocus sequence analysis (MLSA) of nine house-keeping gene fragments (atp...

Maximum-Likelihood tree of partially sequenced 16S rRNA genes.

Alfonso Méndez-Bravo (198487)
Elvis Marian Cortazar-Murillo (4984808)
Edgar Guevara-Avendaño (4984811)
Oscar Ceballos-Luna (4984814)
Benjamín Rodríguez-Haas (4984823)
Ana L. Kiel-Martínez (4984805)
Orlando Hernández-Cristóbal (4984820)
José A. Guerrero-Analco (4984826)
Frédérique Reverchon (4984817)

March 2018

Bold letters indicate rhizobacterial isolates that were obtained in this study. Values above node...

Phylogenetic tree based on 16S rRNA gene sequences (1376 nts) showing the evolutionary relationships among the obtained “B. hampsonii” isolates and Brachyspira spp. reference strains.

Francisco Javier Martínez-Lobo (492808)
Álvaro Hidalgo (492809)
Marta García (5533028)
Héctor Argüello (492810)
Germán Naharro (157076)
Ana Carvajal (157074)
Pedro Rubio (157091)

December 2013

The tree was constructed by means of the neighbour-joining method. Red circles indicate the two c...

Phylogenetic tree constructed by maximum likelihood analysis based on the combined gene sequences of the nearly entire SSU rRNA and D1/D2 domain of LSU rRNA depicting the placement of Hemisphaericaspora nanyangensis sp. nov. and representative neighbouring taxa in the family Debaryomycetaceae [2], [12], [30].

Fengli Hui (539431)
Yongcheng Ren (539430)
Liang Chen (73736)
Ying Li (38224)
Lin Zhang (8926)
Qiuhong Niu (468931)

July 2014

Bootstrap values above 50% are given at nodes based on 1,000 replications. The sequence accession...

16S rRNA gene phylogenetic tree of bacterial strains isolated from New Zealand native legumes and selected Mesorhizobium type strains.

Heng Wee Tan (300712)
Bevan S. Weir (300713)
Noel Carter (300715)
Peter B. Heenan (300716)
Hayley J. Ridgway (300717)
Euan K. James (117985)
Janet I. Sprent (117981)
J. Peter W. Young (50249)
Mitchell Andrews (300718)

February 2013

Ca = Carmichaelia australis; Cm = Carmichaelia monroi; Cn = Carmichaelia nana</i...

Phylogenetic analysis of the 16S rDNA sequences of isolated bacterial strains.

Chien-Yi Chang (233503)
Chong-Lek Koh (309437)
Choon-Kook Sam (309438)
Xin-Yue Chan (309439)
Wai Fong Yin (309440)
Kok Gan Chan (309442)

February 2013

The tree is based on maximum-likelihood (Tamura-Nei model) analysis. Bootstrap values (expressed ...

Phylogenetic trees depicting the phylogenetic position of Ochrobactrum sp. A44T strain among other members of the Ochrobactrum genus.

Dorota M. Krzyżanowska (6250874)
Tomasz Maciąg (6250877)
Adam Ossowicki (710510)
Magdalena Rajewska (6250880)
Zbigniew Kaczyński (227176)
Małgorzata Czerwicka (2242141)
Łukasz Rąbalski (6250883)
Paulina Czaplewska (4235953)
Sylwia Jafra (3878698)

January 2019

(A) Molecular phylogenetic analysis of partial (1335 bp) 16S rRNA gene sequences by the maximum like...

Phylogenetic tree based on ribosomal gene sequences of the bacteria isolated in this study and several related species.

Ameni Loulou (12822365)
Maristella Mastore (11720699)
Sara Caramella (14492953)
Aashaq Hussain Bhat (12458170)
Maurizio Francesco Brivio (11720702)
Ricardo A. R. Machado (10164653)
Sadreddine Kallel (12822377)

January 2023

Phylogenetic relationships based on 16S rRNA gene sequences were inferred by using the Maximum Likel...

Phylogenetic trees are shown and were conducted using the maximum-likelihood method.

Meng Xiao (591353)
Lu Pang (848408)
Sharon C-A. Chen (298938)
Xin Fan (445028)
Li Zhang (8200)
Hai-Xia Li (848409)
Xin Hou (336157)
Jing-Wei Cheng (836667)
Fanrong Kong (218191)
Yu-Pei Zhao (501310)
Ying-Chun Xu (647163)

January 2016

Fig 1a. Phylogenetic tree based on the concatenated gyrB-16S-secA1-hsp65<...

Phylogenetic analysis.

Jieni Lian (1807342)
Jinlyung Choi (1807339)
Yee Shiean Tan (1807345)
Adina Howe (1807348)
Zhiyou Wen (1807336)
Laura R. Jarboe (529248)

February 2016

A maximum likelihood reconstruction of the phylogenetic analysis of 16S rRNA genes of our isolate...

Maximum likelihood phylogenetic tree based on 16S rRNA gene sequences.

Jimmy H. W. Saw (475908)
Michael Schatz (475909)
Mark V. Brown (475910)
Dennis D. Kunkel (475911)
Jamie S. Foster (162153)
Harry Shick (475912)
Stephanie Christensen (475913)
Shaobin Hou (475914)
Xuehua Wan (475915)
Stuart P. Donachie (475916)

October 2013

Sequences were aligned using Muscle, edited with Gblocks, and the tree was inferred using RAxML p...

Maximum likelihood phylogenetic tree based on 16S rRNA gene sequences of bacteria and mitochondria of eukaryota.

Kazumasa Fukuda (409966)
Kazuhiro Yatera (409965)
Midori Ogawa (606680)
Toshinori Kawanami (409964)
Kei Yamasaki (409963)
Shingo Noguchi (409967)
Robert S. Murphy (606681)
Hiroshi Mukae (409973)
Hatsumi Taniguchi (409972)

July 2014

The phylogenetic tree was calculated with MEGA5.2.2 using the maximum likelihood method. The tree...

Evolutionary relationships of the selected strains.

Almudena Escobar-Niño (609768)
Carlos Luna (609769)
Diego Luna (434415)
Ana T. Marcos (609770)
David Cánovas (609771)
Encarnación Mellado (210526)

August 2014

Phylogenetic trees were inferred from the 16S rRNA sequences of the 23 Gram negative (A) and the ...

Multilocus sequence analysis of bradyrhizobia isolated from Aeschynomene species in Senegal

Nzoue, A.
Miche, L
Klonowska, A.
Laguerre, G.
Lajudie, P., De
Moulin, L.

January 2009

Adresse auteur: lionel.moulin@mpl.ird.frInternational audienceThis study reports the multilocus sequ...

Phylogenetically clustering of rhizobia by genome structure: Application to unclassified Rhizobium

Zheng, Jun-Fang
Liu, Gui-Rong
Liu, Shu-Lin

January 2006

Previous research reveals that the genome structures of rhizobial type strains and reference strains...

Multilocus sequence analysis of bradyrhizobia isolated from Aeschynomene species in Senegal.

Nzoué, A.
Miché, L.
Klonowska, A.
Laguerre, G.
de Lajudie, P.
Moulin, L.

September 2009

This study reports the multilocus sequence analysis (MLSA) of nine house-keeping gene fragments (atp...

Maximum-Likelihood tree of partially sequenced 16S rRNA genes.

Alfonso Méndez-Bravo (198487)
Elvis Marian Cortazar-Murillo (4984808)
Edgar Guevara-Avendaño (4984811)
Oscar Ceballos-Luna (4984814)
Benjamín Rodríguez-Haas (4984823)
Ana L. Kiel-Martínez (4984805)
Orlando Hernández-Cristóbal (4984820)
José A. Guerrero-Analco (4984826)
Frédérique Reverchon (4984817)

March 2018

Bold letters indicate rhizobacterial isolates that were obtained in this study. Values above node...

Phylogenetic tree based on 16S rRNA gene sequences (1376 nts) showing the evolutionary relationships among the obtained “B. hampsonii” isolates and Brachyspira spp. reference strains.

Francisco Javier Martínez-Lobo (492808)
Álvaro Hidalgo (492809)
Marta García (5533028)
Héctor Argüello (492810)
Germán Naharro (157076)
Ana Carvajal (157074)
Pedro Rubio (157091)

December 2013

The tree was constructed by means of the neighbour-joining method. Red circles indicate the two c...

Phylogenetic tree constructed by maximum likelihood analysis based on the combined gene sequences of the nearly entire SSU rRNA and D1/D2 domain of LSU rRNA depicting the placement of Hemisphaericaspora nanyangensis sp. nov. and representative neighbouring taxa in the family Debaryomycetaceae [2], [12], [30].

Fengli Hui (539431)
Yongcheng Ren (539430)
Liang Chen (73736)
Ying Li (38224)
Lin Zhang (8926)
Qiuhong Niu (468931)

July 2014

Bootstrap values above 50% are given at nodes based on 1,000 replications. The sequence accession...

16S rRNA gene phylogenetic tree of bacterial strains isolated from New Zealand native legumes and selected Mesorhizobium type strains.

Heng Wee Tan (300712)
Bevan S. Weir (300713)
Noel Carter (300715)
Peter B. Heenan (300716)
Hayley J. Ridgway (300717)
Euan K. James (117985)
Janet I. Sprent (117981)
J. Peter W. Young (50249)
Mitchell Andrews (300718)

February 2013

Ca = Carmichaelia australis; Cm = Carmichaelia monroi; Cn = Carmichaelia nana</i...

Phylogenetic analysis of the 16S rDNA sequences of isolated bacterial strains.

Chien-Yi Chang (233503)
Chong-Lek Koh (309437)
Choon-Kook Sam (309438)
Xin-Yue Chan (309439)
Wai Fong Yin (309440)
Kok Gan Chan (309442)

February 2013

The tree is based on maximum-likelihood (Tamura-Nei model) analysis. Bootstrap values (expressed ...

Maximum likelihood phylogenetic tree based on <i>rrs</i> (16S rRNA) gene sequences (1348 nt) showing the position of strains isolated from <i>Dimorphandra wilsonii</i> nodules within the genus <i>Bradyrhizobium</i>.

Abstract

Extracted data

Maximum likelihood phylogenetic tree based on <i>rrs</i> (16S rRNA) gene sequences (1348 nt) showing the position of strains isolated from <i>Dimorphandra wilsonii</i> nodules within the genus <i>Bradyrhizobium</i>.

Abstract

Extracted data

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