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Top 5 genes in adipose and islet tissues ranked by TIE scores and their gene expression-insulin correlation.

Zhidong Tu (15201)
Mark P. Keller (42421)
Chunsheng Zhang (113054)
Mary E. Rabaglia (113055)
Danielle M. Greenawalt (113057)
Xia Yang (46748)
I-Ming Wang (113059)
Hongyue Dai (113061)
Matthew D. Bruss (113064)
Pek Y. Lum (113067)
Yun-Ping Zhou (113071)
Daniel M. Kemp (113074)
Christina Kendziorski (42423)
Brian S. Yandell (42424)
Alan D. Attie (42426)
Eric E. Schadt (50182)
Jun Zhu (84054)

Publication date

December 2012

DOI

10.1371/journal.pgen.1003107.t004

Abstract

<p>Top 5 genes in adipose and islet tissues ranked by TIE scores and their gene expression-insulin correlation.</p

Extracted data

Related items

Correlations between mRNA levels of the studied genes in both visceral and subcutaneous adipose tissue.

Mercedes Clemente-Postigo (300711)
Maria Isabel Queipo-Ortuño (5652823)
Diego Fernandez-Garcia (5652826)
Ricardo Gomez-Huelgas (343507)
Francisco J. Tinahones (141606)
Fernando Cardona (255935)

February 2013

<p>Correlations were determined by Spearman's correlation coefficient test.</p>a<p>P <0.01;</p>b<p>P...

Sample correlation scores of highly correlated genes (Metabolic and Regulation of actin cytoskeleton pathways).

Tejaswini Narayanan (423875)
Shankar Subramaniam (10068)

June 2013

<p>Sample correlation scores of highly correlated genes (Metabolic and Regulation of actin cytoskele...

Control gene expression in sorted islet cells.

Clare L. Kirkpatrick (364109)
Piero Marchetti (179074)
Francesco Purrello (364110)
Salvatore Piro (221993)
Marco Bugliani (324365)
Domenico Bosco (347441)
Eelco J. P. de Koning (102785)
Marten A. Engelse (102782)
Julie Kerr-Conte (364111)
François Pattou (145757)
Claes B. Wollheim (364112)

February 2013

<p>A: RNA yield (picograms per cell) from the sorted islet cell fractions, expressed as mean + SEM (...

List of top 5 genes for classification.

Emilie Montastier (131471)
Sébastien Déjean (591418)
Caroline Le Gall (591419)
Wim H. M. Saris (37674)
Dominique Langin (37676)
Nathalie Viguerie (37675)

July 2014

<p>DI, dietary intervention; LCD, low calorie diet; WMD, weight maintenance diet.</p><p>Score is the...

Correlation analysis between gene expression level vs. changes in body weight (left) and absolute changes of insulin resistance (right) in omental adipose tissue.

Andreea Oana Mocanu (803403)
Anny Mulya (718516)
Hazel Huang (803404)
Olivia Dan (803405)
Hideharu Shimizu (803406)
Esam Batayyah (803407)
Stacy A. Brethauer (803408)
Anca Dinischiotu (803409)
John P. Kirwan (741677)

October 2015

<p>* Threshold of significance set at P<0.05</p><p>Correlation analysis between gene expression leve...

Correlation between RNA-seq gene expression levels.

Décio L. Eizirik (2227888)
Michael Sammeth (179044)
Thomas Bouckenooghe (179047)
Guy Bottu (179049)
Giorgia Sisino (179051)
Mariana Igoillo-Esteve (179053)
Fernanda Ortis (179055)
Izortze Santin (179057)
Maikel L. Colli (179059)
Jenny Barthson (179062)
Luc Bouwens (179065)
Linda Hughes (179068)
Lorna Gregory (113497)
Gerton Lunter (27174)
Lorella Marselli (179072)
Piero Marchetti (179074)
Mark I. McCarthy (145748)
Miriam Cnop (179076)

March 2012

<p>Gene expression levels were compared among the 5 islet preparations (cultured under control condi...

Correlation analysis between gene expression, and changes in body weight (left) and absolute change in insulin resistance (right) in subcutaneous adipose tissue.

Andreea Oana Mocanu (803403)
Anny Mulya (718516)
Hazel Huang (803404)
Olivia Dan (803405)
Hideharu Shimizu (803406)
Esam Batayyah (803407)
Stacy A. Brethauer (803408)
Anca Dinischiotu (803409)
John P. Kirwan (741677)

October 2015

<p>* Threshold of significance set at P<0.05</p><p>Correlation analysis between gene expression, and...

Top 100 skin-associated genes (SAGs) ranked by fold change of expression compared to the mean of the remaining 104 adult human tissue and cell types in the BIGE.

Peter Arne Gerber (424473)
Peter Hevezi (261803)
Bettina Alexandra Buhren (424474)
Cynthia Martinez (424475)
Holger Schrumpf (424476)
Marcia Gasis (424477)
Susanne Grether-Beck (401876)
Jean Krutmann (424478)
Bernhard Homey (31953)
Albert Zlotnik (68443)

June 2013

<p>Top 100 skin-associated genes (SAGs) ranked by fold change of expression compared to the mean of ...

Correlations between <i>ZAG</i> gene expression levels in adipose tissue and anthropometric and biochemical variables.

Lourdes Garrido-Sánchez (5652385)
Eduardo García-Fuentes (328900)
Diego Fernández-García (328901)
Xavier Escoté (5651725)
Juan Alcaide (328902)
Pablo Perez-Martinez (141579)
Joan Vendrell (293277)
Francisco J. Tinahones (141606)

February 2013

<p>(A) Comparison of ZAG gene expression levels in visceral adipose tissue (VAT) and BMI. (B) Compar...

Correlation between gene expression and the amounts of each lipid in the skin.

Yoshiko Horie (4923043)
Hiroko Makihara (4923037)
Kazumasa Horikawa (227993)
Fumika Takeshige (4923052)
Ai Ibuki (4923049)
Toshihiko Satake (4923040)
Kazunori Yasumura (3510812)
Jiro Maegawa (200391)
Hideaki Mitsui (519807)
Kenichi Ohashi (519813)
Tomoko Akase (4923046)

March 2018

<p>Correlation between gene expression and the amounts of each lipid in the skin.</p

Clustering and functional grouping of genes involved in diabetes.

Sriram Devanathan (474812)
Samuel T. Nemanich (474813)
Attila Kovacs (337522)
Nicole Fettig (474814)
Robert J. Gropler (474815)
Kooresh I. Shoghi (461152)

October 2013

<p>(<b>A</b>) Heat map and Gene correlation clusters of genes involved in diabetes including; transc...

Correlation analysis between gene expression, and change in body weight (left) and absolute change in insulin resistance (right) in mesenteric adipose tissue.

Andreea Oana Mocanu (803403)
Anny Mulya (718516)
Hazel Huang (803404)
Olivia Dan (803405)
Hideharu Shimizu (803406)
Esam Batayyah (803407)
Stacy A. Brethauer (803408)
Anca Dinischiotu (803409)
John P. Kirwan (741677)

October 2015

<p>* Threshold of significance set at P<0.05</p><p>Correlation analysis between gene expression, and...

Comparison of miRNA profiles across tissues.

Martijn van de Bunt (166776)
Kyle J. Gaulton (277252)
Leopold Parts (144647)
Ignasi Moran (277253)
Paul R. Johnson (277254)
Cecilia M. Lindgren (145706)
Jorge Ferrer (25183)
Anna L. Gloyn (146286)
Mark I. McCarthy (145748)

January 2013

<p>The left panel (A) shows the single-linkage hierarchical clustering of inter-tissue profile corre...

List of top 5 genes identified by the MNI analysis at each time point in the subcutaneous fat tissue of HFD-induced obese mice.

Youngshim Choi (394363)
Cheol-Goo Hur (13097)
Taesun Park (394364)

March 2013

<p>List of top 5 genes identified by the MNI analysis at each time point in the subcutaneous fat tis...

Genes associated with adipocyte IR also associated with systemic insulin resistance or T2D.

Agné Kulyté (4060204)
Anna Ehrlund (179683)
Peter Arner (40530)
Ingrid Dahlman (40528)

June 2017

<p>Genes associated with adipocyte IR also associated with systemic insulin resistance or T2D.</p

Correlations between mRNA levels of the studied genes in both visceral and subcutaneous adipose tissue.

Mercedes Clemente-Postigo (300711)
Maria Isabel Queipo-Ortuño (5652823)
Diego Fernandez-Garcia (5652826)
Ricardo Gomez-Huelgas (343507)
Francisco J. Tinahones (141606)
Fernando Cardona (255935)

February 2013

<p>Correlations were determined by Spearman's correlation coefficient test.</p>a<p>P <0.01;</p>b<p>P...

Sample correlation scores of highly correlated genes (Metabolic and Regulation of actin cytoskeleton pathways).

Tejaswini Narayanan (423875)
Shankar Subramaniam (10068)

June 2013

<p>Sample correlation scores of highly correlated genes (Metabolic and Regulation of actin cytoskele...

Control gene expression in sorted islet cells.

Clare L. Kirkpatrick (364109)
Piero Marchetti (179074)
Francesco Purrello (364110)
Salvatore Piro (221993)
Marco Bugliani (324365)
Domenico Bosco (347441)
Eelco J. P. de Koning (102785)
Marten A. Engelse (102782)
Julie Kerr-Conte (364111)
François Pattou (145757)
Claes B. Wollheim (364112)

February 2013

<p>A: RNA yield (picograms per cell) from the sorted islet cell fractions, expressed as mean + SEM (...

List of top 5 genes for classification.

Emilie Montastier (131471)
Sébastien Déjean (591418)
Caroline Le Gall (591419)
Wim H. M. Saris (37674)
Dominique Langin (37676)
Nathalie Viguerie (37675)

July 2014

<p>DI, dietary intervention; LCD, low calorie diet; WMD, weight maintenance diet.</p><p>Score is the...

Correlation analysis between gene expression level vs. changes in body weight (left) and absolute changes of insulin resistance (right) in omental adipose tissue.

Andreea Oana Mocanu (803403)
Anny Mulya (718516)
Hazel Huang (803404)
Olivia Dan (803405)
Hideharu Shimizu (803406)
Esam Batayyah (803407)
Stacy A. Brethauer (803408)
Anca Dinischiotu (803409)
John P. Kirwan (741677)

October 2015

<p>* Threshold of significance set at P<0.05</p><p>Correlation analysis between gene expression leve...

Correlation between RNA-seq gene expression levels.

Décio L. Eizirik (2227888)
Michael Sammeth (179044)
Thomas Bouckenooghe (179047)
Guy Bottu (179049)
Giorgia Sisino (179051)
Mariana Igoillo-Esteve (179053)
Fernanda Ortis (179055)
Izortze Santin (179057)
Maikel L. Colli (179059)
Jenny Barthson (179062)
Luc Bouwens (179065)
Linda Hughes (179068)
Lorna Gregory (113497)
Gerton Lunter (27174)
Lorella Marselli (179072)
Piero Marchetti (179074)
Mark I. McCarthy (145748)
Miriam Cnop (179076)

March 2012

<p>Gene expression levels were compared among the 5 islet preparations (cultured under control condi...

Correlation analysis between gene expression, and changes in body weight (left) and absolute change in insulin resistance (right) in subcutaneous adipose tissue.

Andreea Oana Mocanu (803403)
Anny Mulya (718516)
Hazel Huang (803404)
Olivia Dan (803405)
Hideharu Shimizu (803406)
Esam Batayyah (803407)
Stacy A. Brethauer (803408)
Anca Dinischiotu (803409)
John P. Kirwan (741677)

October 2015

<p>* Threshold of significance set at P<0.05</p><p>Correlation analysis between gene expression, and...

Top 100 skin-associated genes (SAGs) ranked by fold change of expression compared to the mean of the remaining 104 adult human tissue and cell types in the BIGE.

Peter Arne Gerber (424473)
Peter Hevezi (261803)
Bettina Alexandra Buhren (424474)
Cynthia Martinez (424475)
Holger Schrumpf (424476)
Marcia Gasis (424477)
Susanne Grether-Beck (401876)
Jean Krutmann (424478)
Bernhard Homey (31953)
Albert Zlotnik (68443)

June 2013

<p>Top 100 skin-associated genes (SAGs) ranked by fold change of expression compared to the mean of ...

Correlations between <i>ZAG</i> gene expression levels in adipose tissue and anthropometric and biochemical variables.

Lourdes Garrido-Sánchez (5652385)
Eduardo García-Fuentes (328900)
Diego Fernández-García (328901)
Xavier Escoté (5651725)
Juan Alcaide (328902)
Pablo Perez-Martinez (141579)
Joan Vendrell (293277)
Francisco J. Tinahones (141606)

February 2013

<p>(A) Comparison of ZAG gene expression levels in visceral adipose tissue (VAT) and BMI. (B) Compar...

Correlation between gene expression and the amounts of each lipid in the skin.

Yoshiko Horie (4923043)
Hiroko Makihara (4923037)
Kazumasa Horikawa (227993)
Fumika Takeshige (4923052)
Ai Ibuki (4923049)
Toshihiko Satake (4923040)
Kazunori Yasumura (3510812)
Jiro Maegawa (200391)
Hideaki Mitsui (519807)
Kenichi Ohashi (519813)
Tomoko Akase (4923046)

March 2018

<p>Correlation between gene expression and the amounts of each lipid in the skin.</p

Clustering and functional grouping of genes involved in diabetes.

Sriram Devanathan (474812)
Samuel T. Nemanich (474813)
Attila Kovacs (337522)
Nicole Fettig (474814)
Robert J. Gropler (474815)
Kooresh I. Shoghi (461152)

October 2013

<p>(<b>A</b>) Heat map and Gene correlation clusters of genes involved in diabetes including; transc...

Correlation analysis between gene expression, and change in body weight (left) and absolute change in insulin resistance (right) in mesenteric adipose tissue.

Andreea Oana Mocanu (803403)
Anny Mulya (718516)
Hazel Huang (803404)
Olivia Dan (803405)
Hideharu Shimizu (803406)
Esam Batayyah (803407)
Stacy A. Brethauer (803408)
Anca Dinischiotu (803409)
John P. Kirwan (741677)

October 2015

<p>* Threshold of significance set at P<0.05</p><p>Correlation analysis between gene expression, and...

Comparison of miRNA profiles across tissues.

Martijn van de Bunt (166776)
Kyle J. Gaulton (277252)
Leopold Parts (144647)
Ignasi Moran (277253)
Paul R. Johnson (277254)
Cecilia M. Lindgren (145706)
Jorge Ferrer (25183)
Anna L. Gloyn (146286)
Mark I. McCarthy (145748)

January 2013

<p>The left panel (A) shows the single-linkage hierarchical clustering of inter-tissue profile corre...

List of top 5 genes identified by the MNI analysis at each time point in the subcutaneous fat tissue of HFD-induced obese mice.

Youngshim Choi (394363)
Cheol-Goo Hur (13097)
Taesun Park (394364)

March 2013

<p>List of top 5 genes identified by the MNI analysis at each time point in the subcutaneous fat tis...

Genes associated with adipocyte IR also associated with systemic insulin resistance or T2D.

Agné Kulyté (4060204)
Anna Ehrlund (179683)
Peter Arner (40530)
Ingrid Dahlman (40528)

June 2017

<p>Genes associated with adipocyte IR also associated with systemic insulin resistance or T2D.</p

Correlations between mRNA levels of the studied genes in both visceral and subcutaneous adipose tissue.

Mercedes Clemente-Postigo (300711)
Maria Isabel Queipo-Ortuño (5652823)
Diego Fernandez-Garcia (5652826)
Ricardo Gomez-Huelgas (343507)
Francisco J. Tinahones (141606)
Fernando Cardona (255935)

February 2013

<p>Correlations were determined by Spearman's correlation coefficient test.</p>a<p>P <0.01;</p>b<p>P...

Sample correlation scores of highly correlated genes (Metabolic and Regulation of actin cytoskeleton pathways).

Tejaswini Narayanan (423875)
Shankar Subramaniam (10068)

June 2013

<p>Sample correlation scores of highly correlated genes (Metabolic and Regulation of actin cytoskele...

Control gene expression in sorted islet cells.

Clare L. Kirkpatrick (364109)
Piero Marchetti (179074)
Francesco Purrello (364110)
Salvatore Piro (221993)
Marco Bugliani (324365)
Domenico Bosco (347441)
Eelco J. P. de Koning (102785)
Marten A. Engelse (102782)
Julie Kerr-Conte (364111)
François Pattou (145757)
Claes B. Wollheim (364112)

February 2013

<p>A: RNA yield (picograms per cell) from the sorted islet cell fractions, expressed as mean + SEM (...