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Genotype characteristics of each single nucleotide polymorphism.

Rui-Xue Leng (112429)
Wei Wang (17594)
Han Cen (112430)
Mo Zhou (46274)
Chen-Chen Feng (112434)
Yan Zhu (112437)
Xiao-Ke Yang (112441)
Mei Yang (51996)
Yu Zhai (112444)
Bao-Zhu Li (112447)
Xiao-Song Wang (112450)
Rui Li (4631)
Gui-Mei Chen (112456)
Hong Chen (108084)
Hai-Feng Pan (112460)
Dong-Qing Ye (112464)

Publication date

December 2012

DOI

10.1371/journal.pone.0051090.t001

Abstract

<p>MAF, minor allele frequency; 95% CI, 95% confidence intervals; HWE, Hardy-Weinberg Equilibrium.</p>a<p>nor allele/major allele;</p>b<p>P-value for HWE.</p

Extracted data

Related items

Successfully genotyped SNPs, their selection criteria, allele and genotype frequencies, and Hardy-Weinberg equilibrium p-values.

Leena Kovanen (250757)
Mari Kaunisto (443248)
Kati Donner (443249)
Sirkku T. Saarikoski (250759)
Timo Partonen (250765)

August 2013

<p>BP; Base pair position based on NCBI36/hg18 build.</p><p>A<sub>1</sub>; Minor allele.</p><p>A<sub...

Characteristics of studies included in the meta-analysis.

Miao Hu (380096)
Lianying Zhao (380097)
Surong Hu (380098)
Jingting Yang (380099)

February 2013

<p>Hardy-Weinberg equilibrium (HWE) was evaluated using the goodness-of-fit chi-square test. P value...

Information of the 17 SNPs detected.

Yuping Xu (727176)
Zhiqiang Li (102723)
Fenglian Ai (814635)
Jianhua Chen (398446)
Qiong Xing (504044)
Ping Zhou (144535)
Zhaolian Wei (698178)
Yongyong Shi (102679)
Xiao-Jin He (814636)
Yunxia Cao (698179)

October 2015

<p>SNP ref.: single necleaue polymorphism reference; Allel: major > minor HWE: Hardy–Weinberg equili...

Genotype characteristics of each single nucleotide polymorphism.

Ming-Wei Su (276576)
Kuan-Yen Tung (276574)
Pi-Hui Liang (332852)
Ching-Hui Tsai (276573)
Nai-Wei Kuo (277734)
Yungling Leo Lee (176573)

February 2013

<p>Notes: MAF, minor allele frequency; HWE, Hardy Weinberg Equilibrium.</p>*<p>p-value for Hardy-Wei...

Major allele frequencies and Hardy-Weinberg tests for the study population.

Daniela P. Leonardo (789518)
Dulcinéia M. Albuquerque (789519)
Carolina Lanaro (789520)
Letícia C. Baptista (789521)
José G. Cecatti (5665027)
Fernanda G. Surita (563360)
Mary A. Parpinelli (563357)
Fernando F. Costa (789522)
Carla F. Franco-Penteado (789523)
Kleber Y. Fertrin (789524)
Maria Laura Costa (138719)

August 2015

<p>SNP, single nucleotide polymorphism; MAF, major allele frequency; HWE, Hardy-Weinberg equilibrium...

Main characteristics of included studies.

Lei Chen (54296)
Tao Wang (12008)
Lian Liu (371908)
Yongchun Shen (396109)
Chun Wan (396110)
Fuqiang Wen (396111)

March 2013

<p>HWE: Hardy-Weinberg equilibrium; MAF: minor allele frequency; N: number; PCR: polymerase chain re...

COMT SNPs genotype frequency.

Haiwei Xia (297144)
Nan Wu (200090)
Yanjie Su (297145)

February 2013

<p>Notes: mAF, minor allelic frequency; <i>P</i>-HWE, <i>P-value</i> of Hardy–Weinberg equilibrium.<...

<i>FTO</i> A/T polymorphism genotype and allele frequencies amongst all participants according to their nationality.

Nir Eynon (142365)
Emiliya S. Nasibulina (398158)
Lauren K. Banting (398159)
Pawel Cieszczyk (142373)
Agnieszka Maciejewska-Karlowska (142376)
Marek Sawczuk (142380)
Elvira A. Bondareva (398160)
Roza R. Shagimardanova (398161)
Maytal Raz (398162)
Yael Sharon (398163)
Alun G. Williams (398164)
Ildus I. Ahmetov (398165)
Alejandro Lucia (142395)
Ruth Birk (142390)

April 2013

<p><i>Abbreviations</i>: HWE, Hardy-Weinberg equilibrium; MAF, minor allele frequency.</p

Genotype and allelic frequencies of gene polymorphisms in this study.

Luis Alberto Henríquez-Hernández (321122)
Almudena Valenciano (436412)
Palmira Foro-Arnalot (436413)
María Jesús Álvarez-Cubero (150712)
José Manuel Cozar (436414)
José Francisco Suárez-Novo (436415)
Manel Castells-Esteve (436416)
Adriana Ayala-Gil (436417)
Pablo Fernández-Gonzalo (436418)
Montse Ferrer (436419)
Ferrán Guedea (436420)
Gemma Sancho-Pardo (436421)
Jordi Craven-Bartle (436422)
María José Ortiz-Gordillo (436423)
Patricia Cabrera-Roldán (436424)
Estefanía Herrera-Ramos (436425)
Pedro C. Lara (321125)

July 2013

<p>Statistical differences among genotypes andHardy-Weinberg equilibrium (HWE) are shown. Abbreviati...

Genotypic and allelic distribution.

Rick Hursel (429413)
Pilou L. H. R. Janssens (429412)
Freek G. Bouwman (230180)
Edwin C. Mariman (631820)
Margriet S. Westerterp-Plantenga (314116)

September 2014

<p>SNP, single nucleotide polymorphism; G, genotype; F, frequency both absolute (N) and relative (%)...

Allelic and genotype frequencies of XPD K751Q polymorphism (Hardy-Weinberg equilibrium test).

Munn-Sann Lye (757150)
Shaneeta Visuvanathan (757151)
Pei-Pei Chong (757152)
Yoke-Yeow Yap (757153)
Chin-Chye Lim (757154)
Eng-Zhuan Ban (757155)

June 2015

<p>Allelic and genotype frequencies of XPD K751Q polymorphism (Hardy-Weinberg equilibrium test).</p

Main characteristics of studies included in the meta-analysis.

Bei-Bei Zhang (281248)
Xing-Zhen Liu (381602)
Jin Sun (117866)
Yan-Wei Yin (281249)
Qian-Qian Sun (381603)

February 2013

<p>HWE: Hardy-Weinberg equilibrium, Y: yes, N: no, NE: not evaluate, <i>P</i>: P value of test for H...

Characteristics of all tested SNPs in <i>TNF</i>, <i>LTA</i>, <i>TNFRSF1A</i> and <i>TNFRSF1B</i>.

Zhenju Song (131736)
Yuanlin Song (131738)
Jun Yin (94374)
Yao Shen (131740)
Chenling Yao (131744)
Zhan Sun (131749)
Jinjun Jiang (131754)
Duming Zhu (131760)
Yong Zhang (5893)
Qinjun Shen (131767)
Lei Gao (6566)
Chaoyang Tong (131770)
Chunxue Bai (102762)

September 2012

<p>SNP, single nucleotide polymorphism; HWE, Hardy-Weinberg equilibrium; UTR, untranslated region.</...

Characteristics of <i>CHRNA7</i> haplotype-tagging SNPs.

Pei-Hsuan Weng (504636)
Jen-Hau Chen (350256)
Ta-Fu Chen (109904)
Yu Sun (18463)
Li-Li Wen (109894)
Ping-Keung Yip (109885)
Yi-Min Chu (109900)
Yen-Ching Chen (109882)

December 2013

<p>Abbreviations: SNP, single nucleotide polymorphism; MAF, minor allele frequency; HWE, Hardy–Weinb...

Characteristics of SNPs analysed in this study.

Erika Freemantle (143658)
Aleksandra Lalovic (143661)
Naguib Mechawar (143665)
Gustavo Turecki (63744)

August 2012

<p>Minor allele frequencies were comparable to those specified in the CEU HapMap dataset and did not...

Successfully genotyped SNPs, their selection criteria, allele and genotype frequencies, and Hardy-Weinberg equilibrium p-values.

Leena Kovanen (250757)
Mari Kaunisto (443248)
Kati Donner (443249)
Sirkku T. Saarikoski (250759)
Timo Partonen (250765)

August 2013

<p>BP; Base pair position based on NCBI36/hg18 build.</p><p>A<sub>1</sub>; Minor allele.</p><p>A<sub...

Characteristics of studies included in the meta-analysis.

Miao Hu (380096)
Lianying Zhao (380097)
Surong Hu (380098)
Jingting Yang (380099)

February 2013

<p>Hardy-Weinberg equilibrium (HWE) was evaluated using the goodness-of-fit chi-square test. P value...

Information of the 17 SNPs detected.

Yuping Xu (727176)
Zhiqiang Li (102723)
Fenglian Ai (814635)
Jianhua Chen (398446)
Qiong Xing (504044)
Ping Zhou (144535)
Zhaolian Wei (698178)
Yongyong Shi (102679)
Xiao-Jin He (814636)
Yunxia Cao (698179)

October 2015

<p>SNP ref.: single necleaue polymorphism reference; Allel: major > minor HWE: Hardy–Weinberg equili...

Genotype characteristics of each single nucleotide polymorphism.

Ming-Wei Su (276576)
Kuan-Yen Tung (276574)
Pi-Hui Liang (332852)
Ching-Hui Tsai (276573)
Nai-Wei Kuo (277734)
Yungling Leo Lee (176573)

February 2013

<p>Notes: MAF, minor allele frequency; HWE, Hardy Weinberg Equilibrium.</p>*<p>p-value for Hardy-Wei...

Major allele frequencies and Hardy-Weinberg tests for the study population.

Daniela P. Leonardo (789518)
Dulcinéia M. Albuquerque (789519)
Carolina Lanaro (789520)
Letícia C. Baptista (789521)
José G. Cecatti (5665027)
Fernanda G. Surita (563360)
Mary A. Parpinelli (563357)
Fernando F. Costa (789522)
Carla F. Franco-Penteado (789523)
Kleber Y. Fertrin (789524)
Maria Laura Costa (138719)

August 2015

<p>SNP, single nucleotide polymorphism; MAF, major allele frequency; HWE, Hardy-Weinberg equilibrium...

Main characteristics of included studies.

Lei Chen (54296)
Tao Wang (12008)
Lian Liu (371908)
Yongchun Shen (396109)
Chun Wan (396110)
Fuqiang Wen (396111)

March 2013

<p>HWE: Hardy-Weinberg equilibrium; MAF: minor allele frequency; N: number; PCR: polymerase chain re...

COMT SNPs genotype frequency.

Haiwei Xia (297144)
Nan Wu (200090)
Yanjie Su (297145)

February 2013

<p>Notes: mAF, minor allelic frequency; <i>P</i>-HWE, <i>P-value</i> of Hardy–Weinberg equilibrium.<...

<i>FTO</i> A/T polymorphism genotype and allele frequencies amongst all participants according to their nationality.

Nir Eynon (142365)
Emiliya S. Nasibulina (398158)
Lauren K. Banting (398159)
Pawel Cieszczyk (142373)
Agnieszka Maciejewska-Karlowska (142376)
Marek Sawczuk (142380)
Elvira A. Bondareva (398160)
Roza R. Shagimardanova (398161)
Maytal Raz (398162)
Yael Sharon (398163)
Alun G. Williams (398164)
Ildus I. Ahmetov (398165)
Alejandro Lucia (142395)
Ruth Birk (142390)

April 2013

<p><i>Abbreviations</i>: HWE, Hardy-Weinberg equilibrium; MAF, minor allele frequency.</p

Genotype and allelic frequencies of gene polymorphisms in this study.

Luis Alberto Henríquez-Hernández (321122)
Almudena Valenciano (436412)
Palmira Foro-Arnalot (436413)
María Jesús Álvarez-Cubero (150712)
José Manuel Cozar (436414)
José Francisco Suárez-Novo (436415)
Manel Castells-Esteve (436416)
Adriana Ayala-Gil (436417)
Pablo Fernández-Gonzalo (436418)
Montse Ferrer (436419)
Ferrán Guedea (436420)
Gemma Sancho-Pardo (436421)
Jordi Craven-Bartle (436422)
María José Ortiz-Gordillo (436423)
Patricia Cabrera-Roldán (436424)
Estefanía Herrera-Ramos (436425)
Pedro C. Lara (321125)

July 2013

<p>Statistical differences among genotypes andHardy-Weinberg equilibrium (HWE) are shown. Abbreviati...

Genotypic and allelic distribution.

Rick Hursel (429413)
Pilou L. H. R. Janssens (429412)
Freek G. Bouwman (230180)
Edwin C. Mariman (631820)
Margriet S. Westerterp-Plantenga (314116)

September 2014

<p>SNP, single nucleotide polymorphism; G, genotype; F, frequency both absolute (N) and relative (%)...

Allelic and genotype frequencies of XPD K751Q polymorphism (Hardy-Weinberg equilibrium test).

Munn-Sann Lye (757150)
Shaneeta Visuvanathan (757151)
Pei-Pei Chong (757152)
Yoke-Yeow Yap (757153)
Chin-Chye Lim (757154)
Eng-Zhuan Ban (757155)

June 2015

<p>Allelic and genotype frequencies of XPD K751Q polymorphism (Hardy-Weinberg equilibrium test).</p

Main characteristics of studies included in the meta-analysis.

Bei-Bei Zhang (281248)
Xing-Zhen Liu (381602)
Jin Sun (117866)
Yan-Wei Yin (281249)
Qian-Qian Sun (381603)

February 2013

<p>HWE: Hardy-Weinberg equilibrium, Y: yes, N: no, NE: not evaluate, <i>P</i>: P value of test for H...

Characteristics of all tested SNPs in <i>TNF</i>, <i>LTA</i>, <i>TNFRSF1A</i> and <i>TNFRSF1B</i>.

Zhenju Song (131736)
Yuanlin Song (131738)
Jun Yin (94374)
Yao Shen (131740)
Chenling Yao (131744)
Zhan Sun (131749)
Jinjun Jiang (131754)
Duming Zhu (131760)
Yong Zhang (5893)
Qinjun Shen (131767)
Lei Gao (6566)
Chaoyang Tong (131770)
Chunxue Bai (102762)

September 2012

<p>SNP, single nucleotide polymorphism; HWE, Hardy-Weinberg equilibrium; UTR, untranslated region.</...

Characteristics of <i>CHRNA7</i> haplotype-tagging SNPs.

Pei-Hsuan Weng (504636)
Jen-Hau Chen (350256)
Ta-Fu Chen (109904)
Yu Sun (18463)
Li-Li Wen (109894)
Ping-Keung Yip (109885)
Yi-Min Chu (109900)
Yen-Ching Chen (109882)

December 2013

<p>Abbreviations: SNP, single nucleotide polymorphism; MAF, minor allele frequency; HWE, Hardy–Weinb...

Characteristics of SNPs analysed in this study.

Erika Freemantle (143658)
Aleksandra Lalovic (143661)
Naguib Mechawar (143665)
Gustavo Turecki (63744)

August 2012

<p>Minor allele frequencies were comparable to those specified in the CEU HapMap dataset and did not...

Successfully genotyped SNPs, their selection criteria, allele and genotype frequencies, and Hardy-Weinberg equilibrium p-values.

Leena Kovanen (250757)
Mari Kaunisto (443248)
Kati Donner (443249)
Sirkku T. Saarikoski (250759)
Timo Partonen (250765)

August 2013

<p>BP; Base pair position based on NCBI36/hg18 build.</p><p>A<sub>1</sub>; Minor allele.</p><p>A<sub...

Characteristics of studies included in the meta-analysis.

Miao Hu (380096)
Lianying Zhao (380097)
Surong Hu (380098)
Jingting Yang (380099)

February 2013

<p>Hardy-Weinberg equilibrium (HWE) was evaluated using the goodness-of-fit chi-square test. P value...

Information of the 17 SNPs detected.

Yuping Xu (727176)
Zhiqiang Li (102723)
Fenglian Ai (814635)
Jianhua Chen (398446)
Qiong Xing (504044)
Ping Zhou (144535)
Zhaolian Wei (698178)
Yongyong Shi (102679)
Xiao-Jin He (814636)
Yunxia Cao (698179)

October 2015

<p>SNP ref.: single necleaue polymorphism reference; Allel: major > minor HWE: Hardy–Weinberg equili...