<p>(A) A scheme of the Cellular Potts model (CPM). In the CPM, each cell is described over a region of multiple sites on a square lattice, and the shape of individual cells is determined by simulating the minimization process of a given potential energy for the system (see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0052649#s4" target="_blank">Materials and Methods</a> for details). Briefly, in each Monte Carlo step (MCS), a flip of a randomly chosen pixel at the cell boundary (see the <i>ij</i>-th pixel) is adopted with the probability determined by the difference in potential energy between the two configurations. (B) Left: The average values of gonad compaction (circularity) between 12,000 and 20,000 MCS were ca...
International audienceThe physical laws governing the morphogenesis of biological tissues remain lar...
During embryonic development, the behavior of individual cells must be coordinated to create the lar...
Title: Computer predictions of cell movement Author: Vojtěch Bednář Department: Department of Applie...
In the last decade, new computational model environment that includes both discrete and continuous m...
<p>(A) Images from a sample simulation of fission in the epithelial layer at times t = 0, 50, and 10...
International audienceThe cellular Potts model (CPM) is a cellular automaton (CA) for modelling morp...
Abstract. With the aim of developing simulated multicellular organisms that develop, reproduce, and ...
<p>(A) Geometric representation of cells. Cell <i>a</i>, in isolation, is modeled as a disk. Cell <i...
Single and collective cell dynamics, cell shape changes, and cell migration can be conveniently repr...
<p>In computations based on the CPM, a 2-D cell shape (a) is represented by a planar grid (b) using ...
Snapshot shows cell (gray) migrating towards increasing chemical concentration over time (white traj...
(A) Cartoon illustrating the compression experiment using deformable cells in a capsule to calibrate...
<p>(A) Left, cells are presented by geometric elements of cell, edge, and vertex. Right, mechanical ...
Mathematical modeling is an essential approach for the understanding of complex multicellular behavi...
Mathematical modeling is an essential approach for the understanding of complex multicellular behavi...
International audienceThe physical laws governing the morphogenesis of biological tissues remain lar...
During embryonic development, the behavior of individual cells must be coordinated to create the lar...
Title: Computer predictions of cell movement Author: Vojtěch Bednář Department: Department of Applie...
In the last decade, new computational model environment that includes both discrete and continuous m...
<p>(A) Images from a sample simulation of fission in the epithelial layer at times t = 0, 50, and 10...
International audienceThe cellular Potts model (CPM) is a cellular automaton (CA) for modelling morp...
Abstract. With the aim of developing simulated multicellular organisms that develop, reproduce, and ...
<p>(A) Geometric representation of cells. Cell <i>a</i>, in isolation, is modeled as a disk. Cell <i...
Single and collective cell dynamics, cell shape changes, and cell migration can be conveniently repr...
<p>In computations based on the CPM, a 2-D cell shape (a) is represented by a planar grid (b) using ...
Snapshot shows cell (gray) migrating towards increasing chemical concentration over time (white traj...
(A) Cartoon illustrating the compression experiment using deformable cells in a capsule to calibrate...
<p>(A) Left, cells are presented by geometric elements of cell, edge, and vertex. Right, mechanical ...
Mathematical modeling is an essential approach for the understanding of complex multicellular behavi...
Mathematical modeling is an essential approach for the understanding of complex multicellular behavi...
International audienceThe physical laws governing the morphogenesis of biological tissues remain lar...
During embryonic development, the behavior of individual cells must be coordinated to create the lar...
Title: Computer predictions of cell movement Author: Vojtěch Bednář Department: Department of Applie...