<p>Score density is plotted against position. Score density is defined as the sum of positive log-two position weight matrix scores in a twenty base window, divided by the total number of possible binding site positions within that window of the training data. The black line is the simulated background score density; the gray area is the 95% confidence interval about that line. Confidence intervals are wide in windows far from the transcription start site due to the low number of intergenic regions in the training data reaching this distance. The green area is weighted by the model to be part of the promoter-signature distribution; the black area is weighted by the model to be part of the background distribution. Depicted factors are (a) Re...
Is instance, better performance is marked by higher values and plots positioned further to the left....
<p>Reported are the transcription factors whose binding sites deviated significantly from the promot...
<p>The transcription start site depicted as right-point arrow. The relative scores predicted by JASP...
<p>Promoter signatures for all transcription factors with more than twenty screened bound intergenic...
<p>(A) Considering the top 50 target promoters predicted by each of four methods, ChIP-chip, our seq...
<p>The specificity of a transcription factor is measured by the Kullback-Leibler divergence between ...
<p>The figure displays the sequences of matched position weight matrices (PWMs) together with the co...
Transcriptional regulation is mediated by the collective binding of proteins called transcription fa...
<p>The estimated density of positions from the positive set is plotted as a green line, while the de...
<p><b>A</b>) Genome wide spatial distribution of USF1 binding sites in a 201 bp window around c-Jun ...
The plots show the two-dimensional histogram distribution of TU length and different measurements of...
<p>(<b>A</b>) The correlation between A/T content and YFP levels in different window sizes and diffe...
<p>Polymorphic loci are shadowed in gray and the first polymorphic locus of each line is numbered on...
Transcription factors control gene expression by binding to short specific DNA sequences, called tra...
Nd OPT (natural logarithm, optimized matrix length) for each TF. The vertical axis shows the false-p...
Is instance, better performance is marked by higher values and plots positioned further to the left....
<p>Reported are the transcription factors whose binding sites deviated significantly from the promot...
<p>The transcription start site depicted as right-point arrow. The relative scores predicted by JASP...
<p>Promoter signatures for all transcription factors with more than twenty screened bound intergenic...
<p>(A) Considering the top 50 target promoters predicted by each of four methods, ChIP-chip, our seq...
<p>The specificity of a transcription factor is measured by the Kullback-Leibler divergence between ...
<p>The figure displays the sequences of matched position weight matrices (PWMs) together with the co...
Transcriptional regulation is mediated by the collective binding of proteins called transcription fa...
<p>The estimated density of positions from the positive set is plotted as a green line, while the de...
<p><b>A</b>) Genome wide spatial distribution of USF1 binding sites in a 201 bp window around c-Jun ...
The plots show the two-dimensional histogram distribution of TU length and different measurements of...
<p>(<b>A</b>) The correlation between A/T content and YFP levels in different window sizes and diffe...
<p>Polymorphic loci are shadowed in gray and the first polymorphic locus of each line is numbered on...
Transcription factors control gene expression by binding to short specific DNA sequences, called tra...
Nd OPT (natural logarithm, optimized matrix length) for each TF. The vertical axis shows the false-p...
Is instance, better performance is marked by higher values and plots positioned further to the left....
<p>Reported are the transcription factors whose binding sites deviated significantly from the promot...
<p>The transcription start site depicted as right-point arrow. The relative scores predicted by JASP...