<p>(A) A schematic representation of how the genome was divided into blocks of genes to study spreading of altered DNA methylation. (B–C) Analysis of spreading of aberrant methylation within genomic neighborhoods. Loci “<i>i</i>” represent probesets that are significantly hypo- (black) or hyper-methylated (grey) in lymphoma samples compared to normal tissues, and loci “<i>i</i>±<i>j</i>” represent both the (<i>i</i>+<i>j</i>)-th and (<i>i</i>−<i>j</i>)-th neighbors of those probesets. For instance, when we focused on probeset #10 (i.e. <i>i</i> = 10), we analyzed spreading of aberrant methylation at probesets #5, 6, 7, 8, 9, 11, 12, 13, 14 and 15. Panel B displays the change in methylation states while panel C shows the change in IQR (varia...
GMeDIP enrichment ratios of the indicated tissues/cell types. Black boxes represent tDMRs that are m...
<p>A) Gain of bi-allelic expression is accompanied by substantial loss of methylation. B) Tumour sam...
Epigenetics is the study of heritable changes in gene function that occur without a change in DNA se...
<p>The colored bars present DNA methylation measurements of the various loci and their grouping in t...
<p>(A) Graphical explanation of how the distribution of M-scores and IQR are transformed into violin...
<p>The picture shows six Signalmap snapshots of the microarray signals (green) from apparently diffe...
We present a computational method that combines genome-wide DNA methylation and copy number variatio...
<p><b>A)</b> QQ plot of –log10 p-values for testing the null of no association between methylation l...
<p>To determine transgenerational DNA methylation fidelity, methylation levels of specific microarra...
Motivation: Cytosine methylation is widespread in most eukaryotic genomes and is known to play a sub...
Adjacent CpG sites in mammalian genomes can be co-methylated owing to the processivity of methyltran...
<p>Methylation matrix of continuous beta values is transformed into a discrete profile by comparing ...
<p>Panel A shows a heat map of DNA methylation resulting from an unsupervised cluster analysis of hi...
<p>(A) List of genes potentially associated with aberrant methylation patterns in DLBCL. Boxplots vi...
<div><p>Advances in biotechnology have resulted in large-scale studies of DNA methylation. A differe...
GMeDIP enrichment ratios of the indicated tissues/cell types. Black boxes represent tDMRs that are m...
<p>A) Gain of bi-allelic expression is accompanied by substantial loss of methylation. B) Tumour sam...
Epigenetics is the study of heritable changes in gene function that occur without a change in DNA se...
<p>The colored bars present DNA methylation measurements of the various loci and their grouping in t...
<p>(A) Graphical explanation of how the distribution of M-scores and IQR are transformed into violin...
<p>The picture shows six Signalmap snapshots of the microarray signals (green) from apparently diffe...
We present a computational method that combines genome-wide DNA methylation and copy number variatio...
<p><b>A)</b> QQ plot of –log10 p-values for testing the null of no association between methylation l...
<p>To determine transgenerational DNA methylation fidelity, methylation levels of specific microarra...
Motivation: Cytosine methylation is widespread in most eukaryotic genomes and is known to play a sub...
Adjacent CpG sites in mammalian genomes can be co-methylated owing to the processivity of methyltran...
<p>Methylation matrix of continuous beta values is transformed into a discrete profile by comparing ...
<p>Panel A shows a heat map of DNA methylation resulting from an unsupervised cluster analysis of hi...
<p>(A) List of genes potentially associated with aberrant methylation patterns in DLBCL. Boxplots vi...
<div><p>Advances in biotechnology have resulted in large-scale studies of DNA methylation. A differe...
GMeDIP enrichment ratios of the indicated tissues/cell types. Black boxes represent tDMRs that are m...
<p>A) Gain of bi-allelic expression is accompanied by substantial loss of methylation. B) Tumour sam...
Epigenetics is the study of heritable changes in gene function that occur without a change in DNA se...