ARID1A promoter methylation.

Gene transcription coincided with altered DNA methylation of CpG sites located in promoter and non-promoter regions.

Alexandra K. Marr (219077)
Julia L. MacIsaac (641856)
Ruiwei Jiang (641857)
Adriana M. Airo (641858)
Michael S. Kobor (137389)
W. Robert McMaster (219114)

October 2014

A: Illustration of the localization of five selected CpG sites. Gene feature annotation in...

CpG sites with greatest absolute change in DNA methylation status*.

Jacqueline Alexander (4875853)
April M. Teague (4875847)
Jing Chen (4762)
Christopher E. Aston (163563)
Yuet-Kin Leung (565316)
Steven Chernausek (4875844)
Rebecca A. Simmons (284374)
Sara E. Pinney (4875850)

February 2018

CpG sites with greatest absolute change in DNA methylation status<a href="http://www.plosone...

CG dinucleotides enhance promoter activity independent of DNA methylation

Hartl, Dominik
Krebs, Arnaud R
Grand, Ralph S
Baubec, Tuncay
Isbel, Luke
Wirbelauer, Christiane
Burger, Lukas
Schubeler, Dirk

April 2019

Most mammalian RNA Polymerase II initiation events occur at CpG islands, which are rich in CpGs and ...

Methylation change relative to nearest Transcriptional Start Site (TSS).

Iain Hartley (476957)
Fuad F. Elkhoury (476958)
Joo Heon Shin (301388)
Bin Xie (234992)
Xiangqun Gu (476959)
Yuan Gao (159945)
Dan Zhou (29408)
Gabriel G. Haddad (29414)

October 2013

Each point represents a methylation site as measured by MSCC analysis and that passed the filters...

An Unmethylated 39 Promoter-Proximal Region Is Required for Efficient Transcription Initiation

David R. Dickerson
Preeti Goyal
Mark Groudine
Matthew C. Lorincz

October 2015

The promoter regions of approximately 40 % of genes in the human genome are embedded in CpG islands,...

ARID1A gene promoter methylation levels between RNA high (n = 11) and low (n = 22) expression groups.

Xianyu Zhang (275580)
Qian Sun (53880)
Ming Shan (275581)
Ming Niu (275582)
Tong Liu (107783)
Bingshu Xia (275583)
Xiaoshuan Liang (275584)
Wei Wei (21173)
Shanshan Sun (275585)
Youxue Zhang (175674)
Xiaolong Sean Liu (275586)
Qingbin Song (275587)
Yanmei Yang (275588)
Yuyan Ma (169643)
Yang Liu (4829)
Long Yang (139573)
Yanlv Ren (275589)
Guoqiang Zhang (131884)
Da Pang (110728)

January 2013

Relative methylation levels were analyzed with MeDIP-qPCR. Promoter methylation levels (blue bar)...

Bisulfite sequencing of individual CpG sites in the promoter regions of BMPER, CDH1, DUSP4 and LRP12.

Nicole Bethge (487260)
Hilde Honne (487261)
Kim Andresen (630390)
Vera Hilden (487262)
Gunhild Trøen (487263)
Knut Liestøl (123296)
Harald Holte (487265)
Jan Delabie (487266)
Guro E. Lind (207191)
Erlend B. Smeland (131892)

September 2014

CpG sites are represented by a box, a methylated site is symbolized by a dark grey box, a partial...

The CpG island promoter region of the MTHFR gene.

Wei Wu (27708)
Ouxi Shen (223703)
Yufeng Qin (290016)
Xiaobing Niu (360111)
Chuncheng Lu (290013)
Yankai Xia (208567)
Ling Song (3769)
Shoulin Wang (223716)
Xinru Wang (161800)

February 2013

The CpG Island Searcher Program identified a CpG island within the MTHFR gene promoter reg...

Reduced promoter CpG methylation and enhanced RNA expression.

Thomas G. Nührenberg (758785)
Nils Hammann (758786)
Tilman Schnick (758787)
Sebastian Preißl (758788)
Anika Witten (634390)
Monika Stoll (77524)
Ralf Gilsbach (69034)
Franz-Josef Neumann (758789)
Lutz Hein (69036)

June 2015

Left panels display the methylation levels of single CpGs in the promoter regions (TSS ± 500 bp) ...

Transcriptional start site (TSS)-mapping reveals a consistent spatial relationship between MamA sites and TSSs of methylation-affected genes.

Scarlet S. Shell (430744)
Erin G. Prestwich (430745)
Seung-Hun Baek (219974)
Rupal R. Shah (430746)
Christopher M. Sassetti (132594)
Peter C. Dedon (235122)
Sarah M. Fortune (246916)

July 2013

TSSs in strain H37Rv were mapped by the strategy outlined in (A). mRNA was circularized before ra...

CpG islands as genomic footprints of promoters that are associated with replication origins

Antequera, Francisco
Bird, Adrian

September 1999

AbstractThe primary target for DNA methylation in mammalian genomes is cytosine in the dinucleotide ...

DNA methylation directly silences genes with non-CpG island promoters and establishes a nucleosome occupied promoter

Han Han
Connie C. Cortez
Xiaojing Yang
Peter W. Nichols
Peter A. Jones
Gangning Liang

January 2011

g.oxfordjournals.org/ D ow nloaded from 2 Despite the fact that 45 % of all human gene promoters do ...

Status of methylation at the CpG site in the maspin promoter region of TEV-1 cells upon hypoxia and DI A-D: Bisulfite sequencing revealed a methylated CpG island in the maspin promoter region of TEV-1 cells in four groups.

Xinwei Shi (782237)
Hao Liu (12832)
Jing Cao (287196)
Qing Liu (20889)
Guiju Tang (782238)
Wanlu Liu (782239)
Haiyi Liu (782240)
Dongrui Deng (782241)
Fuyuan Qiao (782242)
Yuanyuan Wu (82054)

August 2015

Each square represents an individual CpG site, and the sizes of the yellow parts indicate fractio...

Methylation levels of the CpG sites in the COL1A1 promoter.

Xiaodong Pan (396765)
Zhongpu Chen (396766)
Rong Huang (298496)
Yuyu Yao (150345)
Genshan Ma (150359)

April 2013

The methylation levels of CpG sites in COL1A1 promoter regions from the control group (without tr...

A methyl-sensitive element induces bidirectional transcription in TATA-less CpG island-associated promoters

Amin Mahpour (5866709)
Benjamin S. Scruggs (5866712)
Dominic Smiraglia (4351783)
Toru Ouchi (278650)
Irwin H. Gelman (225639)

October 2018

How TATA-less promoters such as those within CpG islands (CGI) control gene expression is still a su...

Gene transcription coincided with altered DNA methylation of CpG sites located in promoter and non-promoter regions.

Alexandra K. Marr (219077)
Julia L. MacIsaac (641856)
Ruiwei Jiang (641857)
Adriana M. Airo (641858)
Michael S. Kobor (137389)
W. Robert McMaster (219114)

October 2014

A: Illustration of the localization of five selected CpG sites. Gene feature annotation in...

CpG sites with greatest absolute change in DNA methylation status*.

Jacqueline Alexander (4875853)
April M. Teague (4875847)
Jing Chen (4762)
Christopher E. Aston (163563)
Yuet-Kin Leung (565316)
Steven Chernausek (4875844)
Rebecca A. Simmons (284374)
Sara E. Pinney (4875850)

February 2018

CpG sites with greatest absolute change in DNA methylation status<a href="http://www.plosone...

CG dinucleotides enhance promoter activity independent of DNA methylation

Hartl, Dominik
Krebs, Arnaud R
Grand, Ralph S
Baubec, Tuncay
Isbel, Luke
Wirbelauer, Christiane
Burger, Lukas
Schubeler, Dirk

April 2019

Most mammalian RNA Polymerase II initiation events occur at CpG islands, which are rich in CpGs and ...

Methylation change relative to nearest Transcriptional Start Site (TSS).

Iain Hartley (476957)
Fuad F. Elkhoury (476958)
Joo Heon Shin (301388)
Bin Xie (234992)
Xiangqun Gu (476959)
Yuan Gao (159945)
Dan Zhou (29408)
Gabriel G. Haddad (29414)

October 2013

Each point represents a methylation site as measured by MSCC analysis and that passed the filters...

An Unmethylated 39 Promoter-Proximal Region Is Required for Efficient Transcription Initiation

David R. Dickerson
Preeti Goyal
Mark Groudine
Matthew C. Lorincz

October 2015

The promoter regions of approximately 40 % of genes in the human genome are embedded in CpG islands,...

ARID1A gene promoter methylation levels between RNA high (n = 11) and low (n = 22) expression groups.

Xianyu Zhang (275580)
Qian Sun (53880)
Ming Shan (275581)
Ming Niu (275582)
Tong Liu (107783)
Bingshu Xia (275583)
Xiaoshuan Liang (275584)
Wei Wei (21173)
Shanshan Sun (275585)
Youxue Zhang (175674)
Xiaolong Sean Liu (275586)
Qingbin Song (275587)
Yanmei Yang (275588)
Yuyan Ma (169643)
Yang Liu (4829)
Long Yang (139573)
Yanlv Ren (275589)
Guoqiang Zhang (131884)
Da Pang (110728)

January 2013

Relative methylation levels were analyzed with MeDIP-qPCR. Promoter methylation levels (blue bar)...

Bisulfite sequencing of individual CpG sites in the promoter regions of BMPER, CDH1, DUSP4 and LRP12.

Nicole Bethge (487260)
Hilde Honne (487261)
Kim Andresen (630390)
Vera Hilden (487262)
Gunhild Trøen (487263)
Knut Liestøl (123296)
Harald Holte (487265)
Jan Delabie (487266)
Guro E. Lind (207191)
Erlend B. Smeland (131892)

September 2014

CpG sites are represented by a box, a methylated site is symbolized by a dark grey box, a partial...

The CpG island promoter region of the MTHFR gene.

Wei Wu (27708)
Ouxi Shen (223703)
Yufeng Qin (290016)
Xiaobing Niu (360111)
Chuncheng Lu (290013)
Yankai Xia (208567)
Ling Song (3769)
Shoulin Wang (223716)
Xinru Wang (161800)

February 2013

The CpG Island Searcher Program identified a CpG island within the MTHFR gene promoter reg...

Reduced promoter CpG methylation and enhanced RNA expression.

Thomas G. Nührenberg (758785)
Nils Hammann (758786)
Tilman Schnick (758787)
Sebastian Preißl (758788)
Anika Witten (634390)
Monika Stoll (77524)
Ralf Gilsbach (69034)
Franz-Josef Neumann (758789)
Lutz Hein (69036)

June 2015

Left panels display the methylation levels of single CpGs in the promoter regions (TSS ± 500 bp) ...

Transcriptional start site (TSS)-mapping reveals a consistent spatial relationship between MamA sites and TSSs of methylation-affected genes.

Scarlet S. Shell (430744)
Erin G. Prestwich (430745)
Seung-Hun Baek (219974)
Rupal R. Shah (430746)
Christopher M. Sassetti (132594)
Peter C. Dedon (235122)
Sarah M. Fortune (246916)

July 2013

TSSs in strain H37Rv were mapped by the strategy outlined in (A). mRNA was circularized before ra...

CpG islands as genomic footprints of promoters that are associated with replication origins

Antequera, Francisco
Bird, Adrian

September 1999

AbstractThe primary target for DNA methylation in mammalian genomes is cytosine in the dinucleotide ...

DNA methylation directly silences genes with non-CpG island promoters and establishes a nucleosome occupied promoter

Han Han
Connie C. Cortez
Xiaojing Yang
Peter W. Nichols
Peter A. Jones
Gangning Liang

January 2011

g.oxfordjournals.org/ D ow nloaded from 2 Despite the fact that 45 % of all human gene promoters do ...

Status of methylation at the CpG site in the maspin promoter region of TEV-1 cells upon hypoxia and DI A-D: Bisulfite sequencing revealed a methylated CpG island in the maspin promoter region of TEV-1 cells in four groups.

Xinwei Shi (782237)
Hao Liu (12832)
Jing Cao (287196)
Qing Liu (20889)
Guiju Tang (782238)
Wanlu Liu (782239)
Haiyi Liu (782240)
Dongrui Deng (782241)
Fuyuan Qiao (782242)
Yuanyuan Wu (82054)

August 2015

Each square represents an individual CpG site, and the sizes of the yellow parts indicate fractio...

Methylation levels of the CpG sites in the COL1A1 promoter.

Xiaodong Pan (396765)
Zhongpu Chen (396766)
Rong Huang (298496)
Yuyu Yao (150345)
Genshan Ma (150359)

April 2013

The methylation levels of CpG sites in COL1A1 promoter regions from the control group (without tr...

A methyl-sensitive element induces bidirectional transcription in TATA-less CpG island-associated promoters

Amin Mahpour (5866709)
Benjamin S. Scruggs (5866712)
Dominic Smiraglia (4351783)
Toru Ouchi (278650)
Irwin H. Gelman (225639)

October 2018

How TATA-less promoters such as those within CpG islands (CGI) control gene expression is still a su...

Gene transcription coincided with altered DNA methylation of CpG sites located in promoter and non-promoter regions.

Alexandra K. Marr (219077)
Julia L. MacIsaac (641856)
Ruiwei Jiang (641857)
Adriana M. Airo (641858)
Michael S. Kobor (137389)
W. Robert McMaster (219114)

October 2014

A: Illustration of the localization of five selected CpG sites. Gene feature annotation in...

CpG sites with greatest absolute change in DNA methylation status*.

Jacqueline Alexander (4875853)
April M. Teague (4875847)
Jing Chen (4762)
Christopher E. Aston (163563)
Yuet-Kin Leung (565316)
Steven Chernausek (4875844)
Rebecca A. Simmons (284374)
Sara E. Pinney (4875850)

February 2018

CpG sites with greatest absolute change in DNA methylation status<a href="http://www.plosone...

CG dinucleotides enhance promoter activity independent of DNA methylation

Hartl, Dominik
Krebs, Arnaud R
Grand, Ralph S
Baubec, Tuncay
Isbel, Luke
Wirbelauer, Christiane
Burger, Lukas
Schubeler, Dirk

April 2019

Most mammalian RNA Polymerase II initiation events occur at CpG islands, which are rich in CpGs and ...

ARID1A promoter methylation.

Abstract

Extracted data

ARID1A promoter methylation.

Abstract

Extracted data

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