Phylogenetic analysis of <i>Rhodobacteraceae</i> recovered from Kaneohe Bay.

<p>Phylogenetic relationships between SSU rRNA gene clone sequences obtained from Station NB in Kaneohe Bay (prefixes NB031206 and NB062606) and representatives of the Family <i>Rhodobacteraceae</i> of the <i>Alphaproteobacteria</i>. The scale bar corresponds to 0.02 substitutions per nucleotide position. Open circles indicate nodes with bootstrap support between 50–80%, while closed circles indicate bootstrap support >80%, from 450 replicates. The bracket indicates the specific lineage primarily responsible for differences between storm and non-storm <i>Rhodobacteraceae</i> relative abundances. A variety of <i>Gammaproteobacteria</i> were used as outgroups (not shown). Accession numbers for sequences included in the phylogenetic tree but not listed in the figure include: <i>Sulfitobacter</i> - AJ550939, Y16425, AY180103, EF202614, AY180102, Y16427, DQ097527, DQ683726, Y17387, Y13155; <i>Roseovarius</i> - EU156066, AJ534215, AF098495, DQ120726, Y11551; <i>Jannaschia</i> - EF202612, AJ438157, DQ643999, AJ748747, AY906862; <i>Loktanella</i> - AY682198, AB246747, AJ582225, DQ344498, EF202613, AY682199, AJ440997, AJ582226.