<p>(<b>A</b>) Venn diagram between spleen and liver tissues from WT infected mice. (<b>B</b>) Hierarchical clustering of 658 differentially expressed genes between liver from WT and KO infected mouse strains. Differentially expressed genes are shown as log<sub>10</sub>(ratio) of WNV-infected to strain-matched mock-infected mice. Genes whose expression was significantly induced over strain-matched mock-infected mice are depicted in the heat map (1.5 fold; <i>P</i>≤0.01). Clustering was performed using hierarchical UPGMA (unweighted average) with Euclidean distance similarity measure in Spotfire DecisionSite. Functional annotation was performed using the DAVID Bioinformatics Resource version 6.7 and gene ontology accession numbers for biologi...
<p>Left part of the figure represents a scatterplot comparing normalized expression values in WT-inf...
A. PCA plot. B. Hierarchical clustering. C. Volcano plot of differential gene expression results; si...
<p>Heat maps of (A) immune and (B) fibrotic gene markers depicting differentially expressed genes in...
<p>(<b>A</b>) Network analysis of genes induced in WT infected liver tissues comprising the NK cell ...
<p>Venn diagram representing unique host proteins identified according to experimental group compari...
<p>Enrichment map for gene expression in WT infected livers. Nodes represent top scoring Ingenuity P...
<p>Blue and red nodes are <i>maximally transition-relevant</i> (MTR) genes, defined as those genes t...
<p>F4/80<sup>hi</sup> MΦs, CD11b<sup>-</sup> DCs, CD11b<sup>+</sup> DCs or CD11b<sup>+</sup>SSC<sup>...
<p>Two-dimensional hierarchical clustering was done using Resolver System software with an agglomera...
<p>mDC from WT, <i>Irf3<sup>−/−</sup>×Irf7<sup>−/−</sup></i> DKO, <i>Irf3<sup>−/−</sup>×Irf5<sup>−/−...
<div><p>(A) Two-dimensional hierarchical clustering was done using Resolver System software with an ...
<p><b>(A)</b> Heat map displaying 2679 differentially expressed genes (DEGs) in response to infectio...
Total RNA sample of each mouse (4 animals, respectively) was subjected to the microarray analysis, ...
<p>(A) Venn diagram representing the number of differentially expressed cellular genes (>2-fold chan...
<p>(A) In total, eight different groups of DE genes with similar expression kinetics were identified...
<p>Left part of the figure represents a scatterplot comparing normalized expression values in WT-inf...
A. PCA plot. B. Hierarchical clustering. C. Volcano plot of differential gene expression results; si...
<p>Heat maps of (A) immune and (B) fibrotic gene markers depicting differentially expressed genes in...
<p>(<b>A</b>) Network analysis of genes induced in WT infected liver tissues comprising the NK cell ...
<p>Venn diagram representing unique host proteins identified according to experimental group compari...
<p>Enrichment map for gene expression in WT infected livers. Nodes represent top scoring Ingenuity P...
<p>Blue and red nodes are <i>maximally transition-relevant</i> (MTR) genes, defined as those genes t...
<p>F4/80<sup>hi</sup> MΦs, CD11b<sup>-</sup> DCs, CD11b<sup>+</sup> DCs or CD11b<sup>+</sup>SSC<sup>...
<p>Two-dimensional hierarchical clustering was done using Resolver System software with an agglomera...
<p>mDC from WT, <i>Irf3<sup>−/−</sup>×Irf7<sup>−/−</sup></i> DKO, <i>Irf3<sup>−/−</sup>×Irf5<sup>−/−...
<div><p>(A) Two-dimensional hierarchical clustering was done using Resolver System software with an ...
<p><b>(A)</b> Heat map displaying 2679 differentially expressed genes (DEGs) in response to infectio...
Total RNA sample of each mouse (4 animals, respectively) was subjected to the microarray analysis, ...
<p>(A) Venn diagram representing the number of differentially expressed cellular genes (>2-fold chan...
<p>(A) In total, eight different groups of DE genes with similar expression kinetics were identified...
<p>Left part of the figure represents a scatterplot comparing normalized expression values in WT-inf...
A. PCA plot. B. Hierarchical clustering. C. Volcano plot of differential gene expression results; si...
<p>Heat maps of (A) immune and (B) fibrotic gene markers depicting differentially expressed genes in...