Comparison of the sequence assembly scaffold to the genome map.

<p>The sequence assembly is shown with dark grey boxes representing sequence contigs. Contigs were bridged by paired-end sequence reads. The genome map is represented by light grey boxes. Shaded boxes around regions of both maps denote regions where the sequence assembly matches the genome map well. Regions where there are significant discrepancies are numbered and discussed in the results section. The two gaps in the genome map are denoted with asterisks.