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Manhattan Plot of SNP based CNV Statistics. (A)Deletions and (B)Duplications.

Joseph T. Glessner (203229)
Albert Vernon Smith (6608)
Saarene Panossian (285884)
Cecilia E. Kim (203216)
Nagahide Takahashi (144577)
Kelly A. Thomas (203233)
Fengxiang Wang (285890)
Kallyn Seidler (285893)
Tamara B. Harris (110195)
Lenore J. Launer (110269)
Brendan Keating (56416)
John Connolly (285896)
Patrick M. A. Sleiman (236109)
Joseph D. Buxbaum (144578)
Struan F. A. Grant (203247)
Vilmundur Gudnason (8873)
Hakon Hakonarson (102913)

Publication date

February 2013

DOI

10.1371/journal.pone.0053846.g002

Abstract

<p>Manhattan Plot of SNP based CNV Statistics. (A)Deletions and (B)Duplications.</p

Extracted data

Related items

Recovery rate of deletions (red) and duplications (blue) from PennCNV using simulated intensity measurements as a function of CNV size.

Nathan E. Wineinger (170965)
Hemant K. Tiwari (123452)

April 2012

<p>Recovery rate of deletions (red) and duplications (blue) from PennCNV using simulated intensity m...

Deletion properties that distinguish common fragile site genes from tumor suppressor genes.

Megha Rajaram (424995)
Jianping Zhang (161794)
Tim Wang (193976)
Jinyu Li (424996)
Cem Kuscu (137822)
Huan Qi (424997)
Mamoru Kato (4346)
Vladimir Grubor (424998)
Robert J. Weil (123848)
Aslaug Helland (5655307)
Anne-Lise Borrenson-Dale (424999)
Kathleen R. Cho (425000)
Douglas A. Levine (175510)
Alan N. Houghton (217321)
Jedd D. Wolchok (217325)
Lois Myeroff (425001)
Sanford D. Markowitz (414803)
Scott W. Lowe (104375)
Michael Zhang (196907)
Alex Krasnitz (425002)
Robert Lucito (66065)
David Mu (66064)
R. Scott Powers (425003)

June 2013

<p>Scatter dot plots of values for statistics that distinguish focal deletions affecting common frag...

Manhattan plots.

Peter Henneman (174625)
Arjan Bouman (5043482)
Adri Mul (3493835)
Lia Knegt (5043479)
Anne-Marie van der Kevie-Kersemaekers (3501122)
Nitash Zwaveling-Soonawala (5043473)
Hanne E. J. Meijers-Heijboer (395215)
A. S. Paul van Trotsenburg (291417)
Marcel M. Mannens (5043476)

March 2018

<p>(A) Manhattan plot DMP association analysis (probes associated with SNP, MAF>0,05, and probes loc...

Manhattan plot of single-SNP tests comparing case data (n = 41, one case per multiply affected family) with 220 control samples.

Vanisha Mistry (688032)
Nicholas A. Bockett (688033)
Adam P. Levine (473969)
Muddassar M. Mirza (688034)
Karen A. Hunt (688035)
Paul J. Ciclitira (688036)
Holger Hummerich (27634)
Susan L. Neuhausen (238692)
Michael A. Simpson (447824)
Vincent Plagnol (50600)
David A. van Heel (210198)

January 2015

<p>Manhattan plot of single-SNP tests comparing case data (n = 41, one case per multiply affected fa...

The Manhattan plot showing the −log<sub>10</sub>(<i>P</i>-values) of SNPs of the multi-trait test of the whole genome except the X chromosome.

Sunduimijid Bolormaa (543860)
Jennie E. Pryce (543861)
Antonio Reverter (61185)
Yuandan Zhang (154601)
William Barendse (184999)
Kathryn Kemper (543862)
Bruce Tier (543863)
Keith Savin (371048)
Ben J. Hayes (175151)
Michael E. Goddard (252450)

March 2014

<p>The Manhattan plot showing the −log<sub>10</sub>(<i>P</i>-values) of SNPs of the multi-trait test...

Manhattan plot of the <i>p</i>-values of 54,555 autosomal SNPs in association with AERD.

Seung-Woo Shin (425333)
Byung Lae Park (223725)
HunSoo Chang (654984)
Jong Sook Park (238252)
Da-Jeong Bae (654985)
Hyun-Ji Song (654986)
Inseon S. Choi (238259)
Mi-Kyeong Kim (238258)
Hea-Sim Park (654987)
Lyoung Hyo Kim (246325)
Suhg Namgoong (654988)
Ji On Kim (654989)
Hyoung Doo Shin (39713)
Choon-Sik Park (238264)

November 2014

<p>Manhattan plot of the <i>p</i>-values of 54,555 autosomal SNPs in association with AERD.</p

Manhattan plot of additive genetic variance explained by windows of 150 adjacent SNPs for Marbling.

Ana F. B. Magalhães (3160116)
Gregório M. F. de Camargo (3160119)
Gerardo A. Fernandes Junior (3160122)
Daniel G. M. Gordo (3160107)
Rafael L. Tonussi (3160095)
Raphael B. Costa (3160128)
Rafael Espigolan (3160104)
Rafael M. de O. Silva (3160101)
Tiago Bresolin (3160125)
Willian B. F. de Andrade (3160089)
Luciana Takada (3160092)
Fabieli L. B. Feitosa (3160110)
Fernando Baldi (2833280)
Roberto Carvalheiro (523642)
Luis A. L. Chardulo (3160098)
Lucia G. de Albuquerque (3160113)

June 2016

<p>Manhattan plot of additive genetic variance explained by windows of 150 adjacent SNPs for Marblin...

Schematic illustrations of WGS results from three cases representing the three complex CNVs categories: (1) deletions only, (2) duplications only, and (3) deletions and duplications.

Lusine Nazaryan-Petersen (5954039)
Jesper Eisfeldt (5007209)
Maria Pettersson (764125)
Johanna Lundin (5954042)
Daniel Nilsson (29307)
Josephine Wincent (2794045)
Agne Lieden (5663917)
Lovisa Lovmar (5954045)
Jesper Ottosson (5954048)
Jelena Gacic (5954051)
Outi Mäkitie (317072)
Ann Nordgren (507950)
Francesco Vezzi (107361)
Valtteri Wirta (7590)
Max Käller (8703)
Tina Duelund Hjortshøj (5954054)
Cathrine Jespersgaard (331782)
Rayan Houssari (5954057)
Laura Pignata (5954060)
Mads Bak (181535)
Niels Tommerup (118532)
Elisabeth Syk Lundberg (5954063)
Zeynep Tümer (353517)
Anna Lindstrand (764128)

November 2018

(A) Case P2109_123 with DEL-INV-DEL, (B) Case P4855_512 with DUP-N-DUP, and (C) Case P2109_162 with ...

Manhattan plot showing the significance of association for all CNPs and SNPs in the genome-wide CPD analysis.

Natsuhiko Kumasaka (132401)
Masayuki Aoki (132405)
Yukinori Okada (132408)
Atsushi Takahashi (128295)
Kouichi Ozaki (132412)
Taisei Mushiroda (132414)
Tomomitsu Hirota (132417)
Mayumi Tamari (132418)
Toshihiro Tanaka (132419)
Yusuke Nakamura (25445)
Naoyuki Kamatani (936)
Michiaki Kubo (128298)

September 2012

<p>The SNPs consist of both Illumina 610K chip and imputed HapMap SNPs. All CNPs and SNPs are plotte...

Plot of CNVR association with BAVM from the segment-based analysis.

Nasrine Bendjilali (466217)
Helen Kim (58165)
Shantel Weinsheimer (466218)
Diana E. Guo (466219)
Pui-Yan Kwok (24983)
Jonathan G. Zaroff (466220)
Stephen Sidney (466221)
Michael T. Lawton (466222)
Charles E. McCulloch (106600)
Bobby P. C. Koeleman (168543)
Catharina J. M. Klijn (466223)
William L. Young (466224)
Ludmila Pawlikowska (253846)

October 2013

<p>Chromosomes and -log p-values of CNVR association with BAVM are shown on the x and the y axes; re...

NGS data showing CNV in the <i>KCNQ1</i> gene.

Oscar Campuzano (105492)
Georgia Sarquella-Brugada (589041)
Irene Mademont-Soler (672587)
Catarina Allegue (672588)
Sergi Cesar (672589)
Carles Ferrer-Costa (10293)
Monica Coll (672590)
Jesus Mates (672591)
Anna Iglesias (105490)
Josep Brugada (285270)
Ramon Brugada (105500)

December 2014

<p>(A) Coverage of all exons in the <i>KCNQ1</i> gene of several samples. (B) Detail coverage of exo...

Manhattan plot of −log<sub>10</sub>(p-value) for SNP association with ALI.

Jason D. Christie (186403)
Mark M. Wurfel (110947)
Rui Feng (186408)
Grant E. O'Keefe (186411)
Jonathan Bradfield (186414)
Lorraine B. Ware (186417)
David C. Christiani (71959)
Carolyn S. Calfee (186422)
Mitchell J. Cohen (186428)
Michael Matthay (186434)
Nuala J. Meyer (186439)
Cecilia Kim (102878)
Mingyao Li (186444)
Joshua Akey (186450)
Kathleen C. Barnes (134420)
Jonathan Sevransky (20562)
Paul N. Lanken (186456)
Addison K. May (186460)
Richard Aplenc (186465)
James P. Maloney (186468)
Hakon Hakonarson (102913)

January 2012

<p>Manhattan plot of −log<sub>10</sub>(p-value) for SNP association with ALI.</p

Manhattan plot for pair wise F<sub>ST</sub> values between the PJL and other South Asian populations of 1000 Genomes Project.

Muhammad Shakeel (509491)
Muhammad Irfan (255476)
Ishtiaq Ahmad Khan (4840206)

February 2018

<p>The plot is for selected genes which harbored the deleterious SNVs for cardiovascular diseases, a...

Manhattan plots of each chromosome for ADNI-GWAS dataset with all SNPs.

Shuntaro Sato (4025585)
Masao Ueki (173186)

July 2018

<p>Manhattan plots of each chromosome for ADNI-GWAS dataset. P-values using the conventional score t...

CNV proportions across genomic regions and homozygous deletions.

Frédéric J. J. Chain (270412)
Philine G. D. Feulner (331067)
Mahesh Panchal (669458)
Christophe Eizaguirre (669459)
Irene E. Samonte (669460)
Martin Kalbe (47827)
Tobias L. Lenz (669461)
Monika Stoll (77524)
Erich Bornberg-Bauer (135063)
Manfred Milinski (47828)
Thorsten B. H. Reusch (333945)

December 2014

<p>(<b>A</b>) Proportion of deletions (white) and duplications (black) overlapping four mutually exc...

Recovery rate of deletions (red) and duplications (blue) from PennCNV using simulated intensity measurements as a function of CNV size.

Nathan E. Wineinger (170965)
Hemant K. Tiwari (123452)

April 2012

<p>Recovery rate of deletions (red) and duplications (blue) from PennCNV using simulated intensity m...

Deletion properties that distinguish common fragile site genes from tumor suppressor genes.

Megha Rajaram (424995)
Jianping Zhang (161794)
Tim Wang (193976)
Jinyu Li (424996)
Cem Kuscu (137822)
Huan Qi (424997)
Mamoru Kato (4346)
Vladimir Grubor (424998)
Robert J. Weil (123848)
Aslaug Helland (5655307)
Anne-Lise Borrenson-Dale (424999)
Kathleen R. Cho (425000)
Douglas A. Levine (175510)
Alan N. Houghton (217321)
Jedd D. Wolchok (217325)
Lois Myeroff (425001)
Sanford D. Markowitz (414803)
Scott W. Lowe (104375)
Michael Zhang (196907)
Alex Krasnitz (425002)
Robert Lucito (66065)
David Mu (66064)
R. Scott Powers (425003)

June 2013

<p>Scatter dot plots of values for statistics that distinguish focal deletions affecting common frag...

Manhattan plots.

Peter Henneman (174625)
Arjan Bouman (5043482)
Adri Mul (3493835)
Lia Knegt (5043479)
Anne-Marie van der Kevie-Kersemaekers (3501122)
Nitash Zwaveling-Soonawala (5043473)
Hanne E. J. Meijers-Heijboer (395215)
A. S. Paul van Trotsenburg (291417)
Marcel M. Mannens (5043476)

March 2018

<p>(A) Manhattan plot DMP association analysis (probes associated with SNP, MAF>0,05, and probes loc...

Manhattan plot of single-SNP tests comparing case data (n = 41, one case per multiply affected family) with 220 control samples.

Vanisha Mistry (688032)
Nicholas A. Bockett (688033)
Adam P. Levine (473969)
Muddassar M. Mirza (688034)
Karen A. Hunt (688035)
Paul J. Ciclitira (688036)
Holger Hummerich (27634)
Susan L. Neuhausen (238692)
Michael A. Simpson (447824)
Vincent Plagnol (50600)
David A. van Heel (210198)

January 2015

<p>Manhattan plot of single-SNP tests comparing case data (n = 41, one case per multiply affected fa...

The Manhattan plot showing the −log<sub>10</sub>(<i>P</i>-values) of SNPs of the multi-trait test of the whole genome except the X chromosome.

Sunduimijid Bolormaa (543860)
Jennie E. Pryce (543861)
Antonio Reverter (61185)
Yuandan Zhang (154601)
William Barendse (184999)
Kathryn Kemper (543862)
Bruce Tier (543863)
Keith Savin (371048)
Ben J. Hayes (175151)
Michael E. Goddard (252450)

March 2014

<p>The Manhattan plot showing the −log<sub>10</sub>(<i>P</i>-values) of SNPs of the multi-trait test...

Manhattan plot of the <i>p</i>-values of 54,555 autosomal SNPs in association with AERD.

Seung-Woo Shin (425333)
Byung Lae Park (223725)
HunSoo Chang (654984)
Jong Sook Park (238252)
Da-Jeong Bae (654985)
Hyun-Ji Song (654986)
Inseon S. Choi (238259)
Mi-Kyeong Kim (238258)
Hea-Sim Park (654987)
Lyoung Hyo Kim (246325)
Suhg Namgoong (654988)
Ji On Kim (654989)
Hyoung Doo Shin (39713)
Choon-Sik Park (238264)

November 2014

<p>Manhattan plot of the <i>p</i>-values of 54,555 autosomal SNPs in association with AERD.</p

Manhattan plot of additive genetic variance explained by windows of 150 adjacent SNPs for Marbling.

Ana F. B. Magalhães (3160116)
Gregório M. F. de Camargo (3160119)
Gerardo A. Fernandes Junior (3160122)
Daniel G. M. Gordo (3160107)
Rafael L. Tonussi (3160095)
Raphael B. Costa (3160128)
Rafael Espigolan (3160104)
Rafael M. de O. Silva (3160101)
Tiago Bresolin (3160125)
Willian B. F. de Andrade (3160089)
Luciana Takada (3160092)
Fabieli L. B. Feitosa (3160110)
Fernando Baldi (2833280)
Roberto Carvalheiro (523642)
Luis A. L. Chardulo (3160098)
Lucia G. de Albuquerque (3160113)

June 2016

<p>Manhattan plot of additive genetic variance explained by windows of 150 adjacent SNPs for Marblin...

Schematic illustrations of WGS results from three cases representing the three complex CNVs categories: (1) deletions only, (2) duplications only, and (3) deletions and duplications.

Lusine Nazaryan-Petersen (5954039)
Jesper Eisfeldt (5007209)
Maria Pettersson (764125)
Johanna Lundin (5954042)
Daniel Nilsson (29307)
Josephine Wincent (2794045)
Agne Lieden (5663917)
Lovisa Lovmar (5954045)
Jesper Ottosson (5954048)
Jelena Gacic (5954051)
Outi Mäkitie (317072)
Ann Nordgren (507950)
Francesco Vezzi (107361)
Valtteri Wirta (7590)
Max Käller (8703)
Tina Duelund Hjortshøj (5954054)
Cathrine Jespersgaard (331782)
Rayan Houssari (5954057)
Laura Pignata (5954060)
Mads Bak (181535)
Niels Tommerup (118532)
Elisabeth Syk Lundberg (5954063)
Zeynep Tümer (353517)
Anna Lindstrand (764128)

November 2018

(A) Case P2109_123 with DEL-INV-DEL, (B) Case P4855_512 with DUP-N-DUP, and (C) Case P2109_162 with ...

Manhattan plot showing the significance of association for all CNPs and SNPs in the genome-wide CPD analysis.

Natsuhiko Kumasaka (132401)
Masayuki Aoki (132405)
Yukinori Okada (132408)
Atsushi Takahashi (128295)
Kouichi Ozaki (132412)
Taisei Mushiroda (132414)
Tomomitsu Hirota (132417)
Mayumi Tamari (132418)
Toshihiro Tanaka (132419)
Yusuke Nakamura (25445)
Naoyuki Kamatani (936)
Michiaki Kubo (128298)

September 2012

<p>The SNPs consist of both Illumina 610K chip and imputed HapMap SNPs. All CNPs and SNPs are plotte...

Plot of CNVR association with BAVM from the segment-based analysis.

Nasrine Bendjilali (466217)
Helen Kim (58165)
Shantel Weinsheimer (466218)
Diana E. Guo (466219)
Pui-Yan Kwok (24983)
Jonathan G. Zaroff (466220)
Stephen Sidney (466221)
Michael T. Lawton (466222)
Charles E. McCulloch (106600)
Bobby P. C. Koeleman (168543)
Catharina J. M. Klijn (466223)
William L. Young (466224)
Ludmila Pawlikowska (253846)

October 2013

<p>Chromosomes and -log p-values of CNVR association with BAVM are shown on the x and the y axes; re...

NGS data showing CNV in the <i>KCNQ1</i> gene.

Oscar Campuzano (105492)
Georgia Sarquella-Brugada (589041)
Irene Mademont-Soler (672587)
Catarina Allegue (672588)
Sergi Cesar (672589)
Carles Ferrer-Costa (10293)
Monica Coll (672590)
Jesus Mates (672591)
Anna Iglesias (105490)
Josep Brugada (285270)
Ramon Brugada (105500)

December 2014

<p>(A) Coverage of all exons in the <i>KCNQ1</i> gene of several samples. (B) Detail coverage of exo...

Manhattan plot of −log<sub>10</sub>(p-value) for SNP association with ALI.

Jason D. Christie (186403)
Mark M. Wurfel (110947)
Rui Feng (186408)
Grant E. O'Keefe (186411)
Jonathan Bradfield (186414)
Lorraine B. Ware (186417)
David C. Christiani (71959)
Carolyn S. Calfee (186422)
Mitchell J. Cohen (186428)
Michael Matthay (186434)
Nuala J. Meyer (186439)
Cecilia Kim (102878)
Mingyao Li (186444)
Joshua Akey (186450)
Kathleen C. Barnes (134420)
Jonathan Sevransky (20562)
Paul N. Lanken (186456)
Addison K. May (186460)
Richard Aplenc (186465)
James P. Maloney (186468)
Hakon Hakonarson (102913)

January 2012

<p>Manhattan plot of −log<sub>10</sub>(p-value) for SNP association with ALI.</p

Manhattan plot for pair wise F<sub>ST</sub> values between the PJL and other South Asian populations of 1000 Genomes Project.

Muhammad Shakeel (509491)
Muhammad Irfan (255476)
Ishtiaq Ahmad Khan (4840206)

February 2018

<p>The plot is for selected genes which harbored the deleterious SNVs for cardiovascular diseases, a...

Manhattan plots of each chromosome for ADNI-GWAS dataset with all SNPs.

Shuntaro Sato (4025585)
Masao Ueki (173186)

July 2018

<p>Manhattan plots of each chromosome for ADNI-GWAS dataset. P-values using the conventional score t...

CNV proportions across genomic regions and homozygous deletions.

Frédéric J. J. Chain (270412)
Philine G. D. Feulner (331067)
Mahesh Panchal (669458)
Christophe Eizaguirre (669459)
Irene E. Samonte (669460)
Martin Kalbe (47827)
Tobias L. Lenz (669461)
Monika Stoll (77524)
Erich Bornberg-Bauer (135063)
Manfred Milinski (47828)
Thorsten B. H. Reusch (333945)

December 2014

<p>(<b>A</b>) Proportion of deletions (white) and duplications (black) overlapping four mutually exc...

Recovery rate of deletions (red) and duplications (blue) from PennCNV using simulated intensity measurements as a function of CNV size.

Nathan E. Wineinger (170965)
Hemant K. Tiwari (123452)

April 2012

<p>Recovery rate of deletions (red) and duplications (blue) from PennCNV using simulated intensity m...

Deletion properties that distinguish common fragile site genes from tumor suppressor genes.

Megha Rajaram (424995)
Jianping Zhang (161794)
Tim Wang (193976)
Jinyu Li (424996)
Cem Kuscu (137822)
Huan Qi (424997)
Mamoru Kato (4346)
Vladimir Grubor (424998)
Robert J. Weil (123848)
Aslaug Helland (5655307)
Anne-Lise Borrenson-Dale (424999)
Kathleen R. Cho (425000)
Douglas A. Levine (175510)
Alan N. Houghton (217321)
Jedd D. Wolchok (217325)
Lois Myeroff (425001)
Sanford D. Markowitz (414803)
Scott W. Lowe (104375)
Michael Zhang (196907)
Alex Krasnitz (425002)
Robert Lucito (66065)
David Mu (66064)
R. Scott Powers (425003)

June 2013

<p>Scatter dot plots of values for statistics that distinguish focal deletions affecting common frag...

Manhattan plots.

Peter Henneman (174625)
Arjan Bouman (5043482)
Adri Mul (3493835)
Lia Knegt (5043479)
Anne-Marie van der Kevie-Kersemaekers (3501122)
Nitash Zwaveling-Soonawala (5043473)
Hanne E. J. Meijers-Heijboer (395215)
A. S. Paul van Trotsenburg (291417)
Marcel M. Mannens (5043476)

March 2018

<p>(A) Manhattan plot DMP association analysis (probes associated with SNP, MAF>0,05, and probes loc...