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The best scoring ML tree was selected from 30 GARLI analyses under a GTR model.

Dongfa Sun (198916)
Genlou Sun (198908)

Publication date

February 2013

DOI

10.1371/journal.pone.0050369.g001

Abstract

<p>Numbers above branches are ML bootstrap support values, and the numbers below branches are bootstrap support values.</p

Extracted data

Related items

All_data_support_tree

McCarthy, Elizabeth W.
Landis, Jacob B.
Kurti, Amelda
Lawhorn, Amber J.
Chase, Mark W.
Knapp, Sandra
Le Comber, Steven C.
Leitch, Andrew R.
Litt, Amy

May 2019

All concatenated data best maximum likelihood tree from Garli with support values from 1,000 bootstr...

Supplementary Fig. S2.

Shin, Seunggwan
Bayless, Keith M.
Winterton, Shaun L.
Dikow, Torsten
Lessard, Bryan D.
Yeates, David K.
Wiegmann, Brian M.
Trautwein, Michelle D.

November 2017

Best ML tree with branch support from 100 thorough bootstrap replicates for dataset ii, MISSIN

Tree statistics.

Vinson P. Doyle (409974)
Peter V. Oudemans (409975)
Stephen A. Rehner (409976)
Amy Litt (409977)

May 2013

#<p>Taxa: number of taxa included in the analysis.</p>#<p>Chars: number of characters per locus. %PI...

GS_support_tree

McCarthy, Elizabeth W.
Landis, Jacob B.
Kurti, Amelda
Lawhorn, Amber J.
Chase, Mark W.
Knapp, Sandra
Le Comber, Steven C.
Leitch, Andrew R.
Litt, Amy

May 2019

GS best maximum likelihood tree from Garli with support values from 1,000 bootstrap replicates at ea...

Supplementary Fig. S1.

Shin, Seunggwan
Bayless, Keith M.
Winterton, Shaun L.
Dikow, Torsten
Lessard, Bryan D.
Yeates, David K.
Wiegmann, Brian M.
Trautwein, Michelle D.

November 2017

Best ML tree with branch support from 100 thorough bootstrap replicates for dataset i, AL

ITS_support_tree

McCarthy, Elizabeth W.
Landis, Jacob B.
Kurti, Amelda
Lawhorn, Amber J.
Chase, Mark W.
Knapp, Sandra
Le Comber, Steven C.
Leitch, Andrew R.
Litt, Amy

May 2019

ITS best maximum likelihood tree from Garli with support values from 1,000 bootstrap replicates at e...

Supplementary Fig. S4.

Seunggwan Shin (3557783)
Keith M. Bayless (3265686)
Shaun L. Winterton (130102)
Torsten Dikow (3255672)
Bryan D. Lessard (5013971)
David K. Yeates (3265707)
Brian M. Wiegmann (3265674)
Michelle D. Trautwein (502270)

March 2018

Best ML tree with branch support from 100 thorough bootstrap replicates for dataset iv, ALL_ROGU

Supplementary Fig. S7.

Shin, Seunggwan
Bayless, Keith M.
Winterton, Shaun L.
Dikow, Torsten
Lessard, Bryan D.
Yeates, David K.
Wiegmann, Brian M.
Trautwein, Michelle D.

November 2017

Best ML tree with branch support from 100 rapid bootstrap replicates with outgroup Nematocer

Supplementary Fig. S3.

Seunggwan Shin (3557783)
Keith M. Bayless (3265686)
Shaun L. Winterton (130102)
Torsten Dikow (3255672)
Bryan D. Lessard (5013971)
David K. Yeates (3265707)
Brian M. Wiegmann (3265674)
Michelle D. Trautwein (502270)

March 2018

Best ML tree with branch support from 100 thorough bootstrap replicates for dataset iii, COVERAG

Supplementary Fig. S6.

Shin, Seunggwan
Bayless, Keith M.
Winterton, Shaun L.
Dikow, Torsten
Lessard, Bryan D.
Yeates, David K.
Wiegmann, Brian M.
Trautwein, Michelle D.

November 2017

Best ML tree with branch support from 100 thorough bootstrap replicates for dataset vi, COVERAGE_ROG...

ADH_bootstrap_support_tree

McCarthy, Elizabeth W.
Landis, Jacob B.
Kurti, Amelda
Lawhorn, Amber J.
Chase, Mark W.
Knapp, Sandra
Le Comber, Steven C.
Leitch, Andrew R.
Litt, Amy

May 2019

ADH best maximum likelihood tree from Garli with support values from 1,000 bootstrap replicates at e...

LFY_support_tree

McCarthy, Elizabeth W.
Landis, Jacob B.
Kurti, Amelda
Lawhorn, Amber J.
Chase, Mark W.
Knapp, Sandra
Le Comber, Steven C.
Leitch, Andrew R.
Litt, Amy

May 2019

LFY best maximum likelihood tree from Garli with support values from 1,000 bootstrap replicates at e...

Maximum likelihood tree based on combined dataset (GTR+G).

Alice Latinne (123390)
Surachit Waengsothorn (123398)
Prateep Rojanadilok (123404)
Krairat Eiamampai (119674)
Kriangsak Sribuarod (123410)
Johan R. Michaux (123415)

October 2012

<p>Bootstrap support (1000 replicates) and posterior probabilities of nodes are indicated above and ...

GARLI configuration file for best tree

Unmack, Peter

January 2014

Settings used to generate the best ML tree in GARLI. This example is for cytb, but the settings wer...

MADSFUL_support_tree

McCarthy, Elizabeth W.
Landis, Jacob B.
Kurti, Amelda
Lawhorn, Amber J.
Chase, Mark W.
Knapp, Sandra
Le Comber, Steven C.
Leitch, Andrew R.
Litt, Amy

May 2019

MADSFUL best maximum likelihood tree from Garli with support values from 1,000 bootstrap replicates ...

All_data_support_tree

McCarthy, Elizabeth W.
Landis, Jacob B.
Kurti, Amelda
Lawhorn, Amber J.
Chase, Mark W.
Knapp, Sandra
Le Comber, Steven C.
Leitch, Andrew R.
Litt, Amy

May 2019

All concatenated data best maximum likelihood tree from Garli with support values from 1,000 bootstr...

Supplementary Fig. S2.

Shin, Seunggwan
Bayless, Keith M.
Winterton, Shaun L.
Dikow, Torsten
Lessard, Bryan D.
Yeates, David K.
Wiegmann, Brian M.
Trautwein, Michelle D.

November 2017

Best ML tree with branch support from 100 thorough bootstrap replicates for dataset ii, MISSIN

Tree statistics.

Vinson P. Doyle (409974)
Peter V. Oudemans (409975)
Stephen A. Rehner (409976)
Amy Litt (409977)

May 2013

#<p>Taxa: number of taxa included in the analysis.</p>#<p>Chars: number of characters per locus. %PI...

GS_support_tree

McCarthy, Elizabeth W.
Landis, Jacob B.
Kurti, Amelda
Lawhorn, Amber J.
Chase, Mark W.
Knapp, Sandra
Le Comber, Steven C.
Leitch, Andrew R.
Litt, Amy

May 2019

GS best maximum likelihood tree from Garli with support values from 1,000 bootstrap replicates at ea...

Supplementary Fig. S1.

Shin, Seunggwan
Bayless, Keith M.
Winterton, Shaun L.
Dikow, Torsten
Lessard, Bryan D.
Yeates, David K.
Wiegmann, Brian M.
Trautwein, Michelle D.

November 2017

Best ML tree with branch support from 100 thorough bootstrap replicates for dataset i, AL

ITS_support_tree

McCarthy, Elizabeth W.
Landis, Jacob B.
Kurti, Amelda
Lawhorn, Amber J.
Chase, Mark W.
Knapp, Sandra
Le Comber, Steven C.
Leitch, Andrew R.
Litt, Amy

May 2019

ITS best maximum likelihood tree from Garli with support values from 1,000 bootstrap replicates at e...

Supplementary Fig. S4.

Seunggwan Shin (3557783)
Keith M. Bayless (3265686)
Shaun L. Winterton (130102)
Torsten Dikow (3255672)
Bryan D. Lessard (5013971)
David K. Yeates (3265707)
Brian M. Wiegmann (3265674)
Michelle D. Trautwein (502270)

March 2018

Best ML tree with branch support from 100 thorough bootstrap replicates for dataset iv, ALL_ROGU

Supplementary Fig. S7.

Shin, Seunggwan
Bayless, Keith M.
Winterton, Shaun L.
Dikow, Torsten
Lessard, Bryan D.
Yeates, David K.
Wiegmann, Brian M.
Trautwein, Michelle D.

November 2017

Best ML tree with branch support from 100 rapid bootstrap replicates with outgroup Nematocer

Supplementary Fig. S3.

Seunggwan Shin (3557783)
Keith M. Bayless (3265686)
Shaun L. Winterton (130102)
Torsten Dikow (3255672)
Bryan D. Lessard (5013971)
David K. Yeates (3265707)
Brian M. Wiegmann (3265674)
Michelle D. Trautwein (502270)

March 2018

Best ML tree with branch support from 100 thorough bootstrap replicates for dataset iii, COVERAG

Supplementary Fig. S6.

Shin, Seunggwan
Bayless, Keith M.
Winterton, Shaun L.
Dikow, Torsten
Lessard, Bryan D.
Yeates, David K.
Wiegmann, Brian M.
Trautwein, Michelle D.

November 2017

Best ML tree with branch support from 100 thorough bootstrap replicates for dataset vi, COVERAGE_ROG...

ADH_bootstrap_support_tree

McCarthy, Elizabeth W.
Landis, Jacob B.
Kurti, Amelda
Lawhorn, Amber J.
Chase, Mark W.
Knapp, Sandra
Le Comber, Steven C.
Leitch, Andrew R.
Litt, Amy

May 2019

ADH best maximum likelihood tree from Garli with support values from 1,000 bootstrap replicates at e...

LFY_support_tree

McCarthy, Elizabeth W.
Landis, Jacob B.
Kurti, Amelda
Lawhorn, Amber J.
Chase, Mark W.
Knapp, Sandra
Le Comber, Steven C.
Leitch, Andrew R.
Litt, Amy

May 2019

LFY best maximum likelihood tree from Garli with support values from 1,000 bootstrap replicates at e...

Maximum likelihood tree based on combined dataset (GTR+G).

Alice Latinne (123390)
Surachit Waengsothorn (123398)
Prateep Rojanadilok (123404)
Krairat Eiamampai (119674)
Kriangsak Sribuarod (123410)
Johan R. Michaux (123415)

October 2012

<p>Bootstrap support (1000 replicates) and posterior probabilities of nodes are indicated above and ...

GARLI configuration file for best tree

Unmack, Peter

January 2014

Settings used to generate the best ML tree in GARLI. This example is for cytb, but the settings wer...

MADSFUL_support_tree

McCarthy, Elizabeth W.
Landis, Jacob B.
Kurti, Amelda
Lawhorn, Amber J.
Chase, Mark W.
Knapp, Sandra
Le Comber, Steven C.
Leitch, Andrew R.
Litt, Amy

May 2019

MADSFUL best maximum likelihood tree from Garli with support values from 1,000 bootstrap replicates ...

All_data_support_tree

McCarthy, Elizabeth W.
Landis, Jacob B.
Kurti, Amelda
Lawhorn, Amber J.
Chase, Mark W.
Knapp, Sandra
Le Comber, Steven C.
Leitch, Andrew R.
Litt, Amy

May 2019

All concatenated data best maximum likelihood tree from Garli with support values from 1,000 bootstr...

Supplementary Fig. S2.

Shin, Seunggwan
Bayless, Keith M.
Winterton, Shaun L.
Dikow, Torsten
Lessard, Bryan D.
Yeates, David K.
Wiegmann, Brian M.
Trautwein, Michelle D.

November 2017

Best ML tree with branch support from 100 thorough bootstrap replicates for dataset ii, MISSIN

Tree statistics.

Vinson P. Doyle (409974)
Peter V. Oudemans (409975)
Stephen A. Rehner (409976)
Amy Litt (409977)

May 2013

#<p>Taxa: number of taxa included in the analysis.</p>#<p>Chars: number of characters per locus. %PI...