These screenshots present segmentation results on a sagittal (upper row) and an axial (lower row) slice for the manual segmentation (middle images, yellow) and the Slicer-based GrowCut segmentation (right images, magenta).

Segmentation examples with for each example: Original resized slices 18F-FET (top), original mask (middle up), predicted mask + threshold (middle down) and difference between the predicted and original mask (bottom, with false negative in red and false positive in blue).

Paul Blanc-Durand (4246504)
Axel Van Der Gucht (747946)
Niklaus Schaefer (5100758)
Emmanuel Itti (747948)
John O. Prior (5100761)

April 2018

Segmentation examples with for each example: Original resized slices 18F-FET (top), or...

3D segmentation result (left and middle image) and 2D segmentation result with the user-defined seed point in blue (rightmost image).

Robert Schwarzenberg (547288)
Bernd Freisleben (331877)
Christopher Nimsky (290210)
Jan Egger (294862)

April 2014

3D segmentation result (left and middle image) and 2D segmentation result with the user-defined s...

Axial slice of a ground truth pancreas segmentation in an abdominal CT scan (MSD), cropped to show detail of surrounding tissues.

Moritz Knolle (11301846)
Georgios Kaissis (6057578)
Friederike Jungmann (11200864)
Sebastian Ziegelmayer (6169598)
Daniel Sasse (1919800)
Marcus Makowski (6813464)
Daniel Rueckert (171282)
Rickmer Braren (342883)

August 2021

Axial slice of a ground truth pancreas segmentation in an abdominal CT scan (MSD), cropped to show d...

Algorithmic (GrowCut) segmentation in Slicer.

Jürgen Wallner (3850843)
Kerstin Hochegger (5204354)
Xiaojun Chen (317104)
Irene Mischak (5204357)
Knut Reinbacher (4373002)
Mauro Pau (5204360)
Tomislav Zrnc (5204363)
Katja Schwenzer-Zimmerer (4372999)
Wolfgang Zemann (5204351)
Dieter Schmalstieg (3815326)
Jan Egger (294862)

May 2018

(a) Fore- (green) and background (yellow) initialization of GrowCut in the lower jawbone i...

These images present the segmentation result (green) of the GrowCut algorithm of Slicer: axial (left image), sagittal (middle image) and coronal (right image).

Jan Egger (294862)
Tina Kapur (294865)
Christopher Nimsky (290210)
Ron Kikinis (92001)

February 2013

Note: the pituitary adenoma and background initialization for this segmentation result is presen...

Several axial slices with automatic segmentation results (red).

Jan Egger (294862)

October 2013

The fourth slice from the left contains also the user-defined seed point from which the segmentat...

Segmentation results (red) in axial and sagittal reformatting (blue arrow: position of the seed point).

Jan Egger (294862)

October 2013

Segmentation results (red) in axial and sagittal reformatting (blue arrow: position of the seed p...

SAT (top row) and VAT (bottom row) segmentation from images of one subject overlaid on slice display for: (a) abdomen, (b) thigh, (c) slice in upper thorax, (d) slice in mid thorax, and (e) slice in lower thorax at level of diaphragm.

Yubing Tong (3145167)
Jayaram K. Udupa (3145170)
Drew A. Torigian (3145179)
Dewey Odhner (3611690)
Caiyun Wu (540353)
Gargi Pednekar (3611702)
Scott Palmer (3611696)
Anna Rozenshtein (421132)
Melissa A. Shirk (3611699)
John D. Newell (3611693)
Mary Porteous (547050)
Joshua M. Diamond (137007)
Jason D. Christie (186403)
David J. Lederer (293316)

January 2017

SAT (top row) and VAT (bottom row) segmentation from images of one subject overlaid on slice disp...

Segmentation results (red) for three different cases of proposed algorithm at the axial height of the user-defined seed point (blue).

Jan Egger (294862)

October 2013

Segmentation results (red) for three different cases of proposed algorithm at the axial he...

Our segmentation (red) with respect to the expert’s manual ground truth (green): The coronal (left), axial (middle), and sagittal (right) cross-sections for two different subjects in the first and second rows.

Mohamed Shehata (5513624)
Ali Mahmoud (148657)
Ahmed Soliman (4591621)
Fahmi Khalifa (5513621)
Mohammed Ghazal (4591615)
Mohamed Abou El-Ghar (5513627)
Moumen El-Melegy (5513618)
Ayman El-Baz (1372899)

July 2018

Our segmentation (red) with respect to the expert’s manual ground truth (green): The coronal (lef...

Sub steps of semi-automatic segmentation.

Bert Vandeghinste (428996)
Stefaan Vandenberghe (428997)
Chris Vanhove (428998)
Steven Staelens (428999)
Roel Van Holen (429000)

July 2013

Transversal and sagittal slices of each automatic segmentation operation, going from the reconstr...

Segmentation results for slice 57 of subject #27 showing above the masks obtained by automatic segmentation for left and right NLC and below the contours of the segmented left and right NLC superimposed to CT slice.

Lucia Jañez-Garcia (3169641)
Federico Saenz-Frances (3169653)
Jose M. Ramirez-Sebastian (3169656)
Nicolas Toledano-Fernandez (3169650)
Maria Urbasos-Pascual (3169647)
Luis Jañez-Escalada (3169644)

May 2016

Segmentation results for slice 57 of subject #27 showing above the masks obtained by automatic se...

Segmentation results on one test CT image visualized in 2D sagittal slices.

Chengwen Chu (829443)
Daniel L. Belavý (395950)
Gabriele Armbrecht (829444)
Martin Bansmann (829445)
Dieter Felsenberg (223848)
Guoyan Zheng (829446)

November 2015

The automatic segmentation (the bottom row) are compared with the ground-truth segmentation (the ...

Workflow: The phases of the user guided GrowCut segmentation process is shown separately in more detail.

Jürgen Wallner (3850843)
Kerstin Hochegger (5204354)
Xiaojun Chen (317104)
Irene Mischak (5204357)
Knut Reinbacher (4373002)
Mauro Pau (5204360)
Tomislav Zrnc (5204363)
Katja Schwenzer-Zimmerer (4372999)
Wolfgang Zemann (5204351)
Dieter Schmalstieg (3815326)
Jan Egger (294862)

May 2018

Note: The used segmentation procedures were performed equally for each data set.</p

Vertebrae segmentation with the GrowCut approach.

Jan Egger (294862)
Tina Kapur (294865)
Thomas Dukatz (331870)
Malgorzata Kolodziej (331872)
Dženan Zukić (331874)
Bernd Freisleben (331877)
Christopher Nimsky (290210)

February 2013

The images on the left side (A, C and E) show examples for a manual initialization of the algorit...

Segmentation examples with for each example: Original resized slices 18F-FET (top), original mask (middle up), predicted mask + threshold (middle down) and difference between the predicted and original mask (bottom, with false negative in red and false positive in blue).

Paul Blanc-Durand (4246504)
Axel Van Der Gucht (747946)
Niklaus Schaefer (5100758)
Emmanuel Itti (747948)
John O. Prior (5100761)

April 2018

Segmentation examples with for each example: Original resized slices 18F-FET (top), or...

3D segmentation result (left and middle image) and 2D segmentation result with the user-defined seed point in blue (rightmost image).

Robert Schwarzenberg (547288)
Bernd Freisleben (331877)
Christopher Nimsky (290210)
Jan Egger (294862)

April 2014

3D segmentation result (left and middle image) and 2D segmentation result with the user-defined s...

Axial slice of a ground truth pancreas segmentation in an abdominal CT scan (MSD), cropped to show detail of surrounding tissues.

Moritz Knolle (11301846)
Georgios Kaissis (6057578)
Friederike Jungmann (11200864)
Sebastian Ziegelmayer (6169598)
Daniel Sasse (1919800)
Marcus Makowski (6813464)
Daniel Rueckert (171282)
Rickmer Braren (342883)

August 2021

Axial slice of a ground truth pancreas segmentation in an abdominal CT scan (MSD), cropped to show d...

Algorithmic (GrowCut) segmentation in Slicer.

Jürgen Wallner (3850843)
Kerstin Hochegger (5204354)
Xiaojun Chen (317104)
Irene Mischak (5204357)
Knut Reinbacher (4373002)
Mauro Pau (5204360)
Tomislav Zrnc (5204363)
Katja Schwenzer-Zimmerer (4372999)
Wolfgang Zemann (5204351)
Dieter Schmalstieg (3815326)
Jan Egger (294862)

May 2018

(a) Fore- (green) and background (yellow) initialization of GrowCut in the lower jawbone i...

These images present the segmentation result (green) of the GrowCut algorithm of Slicer: axial (left image), sagittal (middle image) and coronal (right image).

Jan Egger (294862)
Tina Kapur (294865)
Christopher Nimsky (290210)
Ron Kikinis (92001)

February 2013

Note: the pituitary adenoma and background initialization for this segmentation result is presen...

Several axial slices with automatic segmentation results (red).

Jan Egger (294862)

October 2013

The fourth slice from the left contains also the user-defined seed point from which the segmentat...

Segmentation results (red) in axial and sagittal reformatting (blue arrow: position of the seed point).

Jan Egger (294862)

October 2013

Segmentation results (red) in axial and sagittal reformatting (blue arrow: position of the seed p...

SAT (top row) and VAT (bottom row) segmentation from images of one subject overlaid on slice display for: (a) abdomen, (b) thigh, (c) slice in upper thorax, (d) slice in mid thorax, and (e) slice in lower thorax at level of diaphragm.

Yubing Tong (3145167)
Jayaram K. Udupa (3145170)
Drew A. Torigian (3145179)
Dewey Odhner (3611690)
Caiyun Wu (540353)
Gargi Pednekar (3611702)
Scott Palmer (3611696)
Anna Rozenshtein (421132)
Melissa A. Shirk (3611699)
John D. Newell (3611693)
Mary Porteous (547050)
Joshua M. Diamond (137007)
Jason D. Christie (186403)
David J. Lederer (293316)

January 2017

SAT (top row) and VAT (bottom row) segmentation from images of one subject overlaid on slice disp...

Segmentation results (red) for three different cases of proposed algorithm at the axial height of the user-defined seed point (blue).

Jan Egger (294862)

October 2013

Segmentation results (red) for three different cases of proposed algorithm at the axial he...

Our segmentation (red) with respect to the expert’s manual ground truth (green): The coronal (left), axial (middle), and sagittal (right) cross-sections for two different subjects in the first and second rows.

Mohamed Shehata (5513624)
Ali Mahmoud (148657)
Ahmed Soliman (4591621)
Fahmi Khalifa (5513621)
Mohammed Ghazal (4591615)
Mohamed Abou El-Ghar (5513627)
Moumen El-Melegy (5513618)
Ayman El-Baz (1372899)

July 2018

Our segmentation (red) with respect to the expert’s manual ground truth (green): The coronal (lef...

Sub steps of semi-automatic segmentation.

Bert Vandeghinste (428996)
Stefaan Vandenberghe (428997)
Chris Vanhove (428998)
Steven Staelens (428999)
Roel Van Holen (429000)

July 2013

Transversal and sagittal slices of each automatic segmentation operation, going from the reconstr...

Segmentation results for slice 57 of subject #27 showing above the masks obtained by automatic segmentation for left and right NLC and below the contours of the segmented left and right NLC superimposed to CT slice.

Lucia Jañez-Garcia (3169641)
Federico Saenz-Frances (3169653)
Jose M. Ramirez-Sebastian (3169656)
Nicolas Toledano-Fernandez (3169650)
Maria Urbasos-Pascual (3169647)
Luis Jañez-Escalada (3169644)

May 2016

Segmentation results for slice 57 of subject #27 showing above the masks obtained by automatic se...

Segmentation results on one test CT image visualized in 2D sagittal slices.

Chengwen Chu (829443)
Daniel L. Belavý (395950)
Gabriele Armbrecht (829444)
Martin Bansmann (829445)
Dieter Felsenberg (223848)
Guoyan Zheng (829446)

November 2015

The automatic segmentation (the bottom row) are compared with the ground-truth segmentation (the ...

Workflow: The phases of the user guided GrowCut segmentation process is shown separately in more detail.

Jürgen Wallner (3850843)
Kerstin Hochegger (5204354)
Xiaojun Chen (317104)
Irene Mischak (5204357)
Knut Reinbacher (4373002)
Mauro Pau (5204360)
Tomislav Zrnc (5204363)
Katja Schwenzer-Zimmerer (4372999)
Wolfgang Zemann (5204351)
Dieter Schmalstieg (3815326)
Jan Egger (294862)

May 2018

Note: The used segmentation procedures were performed equally for each data set.</p

Vertebrae segmentation with the GrowCut approach.

Jan Egger (294862)
Tina Kapur (294865)
Thomas Dukatz (331870)
Malgorzata Kolodziej (331872)
Dženan Zukić (331874)
Bernd Freisleben (331877)
Christopher Nimsky (290210)

February 2013

The images on the left side (A, C and E) show examples for a manual initialization of the algorit...

Segmentation examples with for each example: Original resized slices 18F-FET (top), original mask (middle up), predicted mask + threshold (middle down) and difference between the predicted and original mask (bottom, with false negative in red and false positive in blue).

Paul Blanc-Durand (4246504)
Axel Van Der Gucht (747946)
Niklaus Schaefer (5100758)
Emmanuel Itti (747948)
John O. Prior (5100761)

April 2018

Segmentation examples with for each example: Original resized slices 18F-FET (top), or...

3D segmentation result (left and middle image) and 2D segmentation result with the user-defined seed point in blue (rightmost image).

Robert Schwarzenberg (547288)
Bernd Freisleben (331877)
Christopher Nimsky (290210)
Jan Egger (294862)

April 2014

3D segmentation result (left and middle image) and 2D segmentation result with the user-defined s...

Axial slice of a ground truth pancreas segmentation in an abdominal CT scan (MSD), cropped to show detail of surrounding tissues.

Moritz Knolle (11301846)
Georgios Kaissis (6057578)
Friederike Jungmann (11200864)
Sebastian Ziegelmayer (6169598)
Daniel Sasse (1919800)
Marcus Makowski (6813464)
Daniel Rueckert (171282)
Rickmer Braren (342883)

August 2021

Axial slice of a ground truth pancreas segmentation in an abdominal CT scan (MSD), cropped to show d...

These screenshots present segmentation results on a sagittal (upper row) and an axial (lower row) slice for the manual segmentation (middle images, yellow) and the Slicer-based GrowCut segmentation (right images, magenta).

Abstract

Extracted data

These screenshots present segmentation results on a sagittal (upper row) and an axial (lower row) slice for the manual segmentation (middle images, yellow) and the Slicer-based GrowCut segmentation (right images, magenta).

Abstract

Extracted data

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