<p>The algorithm was applied to homogenize the Hamza et al. cohort. The algorithm parameters were selected based on the value of the potential p-value bias test (see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0048653#pone-0048653-t001" target="_blank">Table 1</a> and main text). Graph <b>a</b>) shows potential p-value bias versus % of cohort weight decrease. A 7% cohort weight decrease was selected, as weight decreases beyond this value produced only a marginal further decline in the potential p-value bias. <b>b</b>) The sphere weight parameter was set to 30. <b>c</b>) A 0.2 knocked-down weight was selected. In each of these graphs, the two parameters not represented are held at their selected values.</p
(a), (b) and (c): Plots of the genotype error (eZ), proportion error (eW) and error of success proba...
<p>(<b>A</b>) The number of genes that occur two or more times above each Z-score threshold, for thr...
In this paper, some new algorithms for estimating the biasing parameters of the ridge, Liu and two-p...
<p>Consider the Fisher exact test p-value associated with an OR estimate for a hypothetical genotype...
<p>Distribution density plots for non-optimized (control) and optimized signatures verify that signi...
<p>Relative biases are plotted as a function of the coefficient of variation . The different curves ...
<p>Bars show the (a) mean population growth rate and (b) mean rate of allele frequency change of sim...
<p>The “False Negatives” column shows the total number of false negatives produced by each algorithm...
<p><b>a</b>) Euclidean-distance spheres on the space defined by the first three principal component ...
In general, biologically-inspired multi-objective optimization algorithms comprise several parameter...
<p>Algorithm for the selection of candidate biomarkers from a large public dataset of pancreatic can...
<p><b>a</b>) Synthetic diseased-healthy phenotype labels were assigned to the Hamza et al. cohort su...
(A) Diagram (not to scale) of the demographic model with all the optimized parameters in blue for th...
†<p>Sensitivity analyses were performed on this parameter (<a href="http://www.ploscompbiol.org/arti...
The case-control study design is popular for genetic association studies of complex human diseases. ...
(a), (b) and (c): Plots of the genotype error (eZ), proportion error (eW) and error of success proba...
<p>(<b>A</b>) The number of genes that occur two or more times above each Z-score threshold, for thr...
In this paper, some new algorithms for estimating the biasing parameters of the ridge, Liu and two-p...
<p>Consider the Fisher exact test p-value associated with an OR estimate for a hypothetical genotype...
<p>Distribution density plots for non-optimized (control) and optimized signatures verify that signi...
<p>Relative biases are plotted as a function of the coefficient of variation . The different curves ...
<p>Bars show the (a) mean population growth rate and (b) mean rate of allele frequency change of sim...
<p>The “False Negatives” column shows the total number of false negatives produced by each algorithm...
<p><b>a</b>) Euclidean-distance spheres on the space defined by the first three principal component ...
In general, biologically-inspired multi-objective optimization algorithms comprise several parameter...
<p>Algorithm for the selection of candidate biomarkers from a large public dataset of pancreatic can...
<p><b>a</b>) Synthetic diseased-healthy phenotype labels were assigned to the Hamza et al. cohort su...
(A) Diagram (not to scale) of the demographic model with all the optimized parameters in blue for th...
†<p>Sensitivity analyses were performed on this parameter (<a href="http://www.ploscompbiol.org/arti...
The case-control study design is popular for genetic association studies of complex human diseases. ...
(a), (b) and (c): Plots of the genotype error (eZ), proportion error (eW) and error of success proba...
<p>(<b>A</b>) The number of genes that occur two or more times above each Z-score threshold, for thr...
In this paper, some new algorithms for estimating the biasing parameters of the ridge, Liu and two-p...